PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013638773.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TCP | ||||||||
Protein Properties | Length: 319aa MW: 35384.4 Da PI: 7.7635 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 107.4 | 2.2e-33 | 84 | 204 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg...... 88 g+kdrhsk++T +g+RdRRvRls+++a++++dLq++LG+d++sk+++WLl++ak++i+el+ ++ s+++++ ++++ + s++ + XP_013638773.1 84 FGGKDRHSKVCTLRGLRDRRVRLSVPTAIQLYDLQERLGLDQPSKAVDWLLNAAKEEIDELPPLPVSPETFSlfNHHQAFLNLSQPPGQdstqlg 178 689*************************************************************7777766655555555555533333334455 PP TCP 89 .........................k 89 + XP_013638773.1 179 fktngcveesntttsreetnnnhigS 204 55544443221111111111112221 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 31.748 | 86 | 144 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 7.5E-30 | 86 | 207 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MTVQTQELNT SVMNTGPWRD ANDDVSGGTR TRRIVEEDSE EAVVVAVATS GKPVIKKPPT 60 SISSSSSSWM KSKDPRIVRV SRAFGGKDRH SKVCTLRGLR DRRVRLSVPT AIQLYDLQER 120 LGLDQPSKAV DWLLNAAKEE IDELPPLPVS PETFSLFNHH QAFLNLSQPP GQDSTQLGFK 180 TNGCVEESNT TTSREETNNN HIGSYGTYQN MEQHQQQHTR FQADYPHHQH QLHSLVPIQS 240 QFLVCPMTAS STTTTIQSLF PSSSSAGSRT METTDPRQMV SHFQMPSMGS SSSSQNISTL 300 YSLLHGGSNP MPSVQFNRK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 6e-19 | 91 | 145 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 6e-19 | 91 | 145 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:25378179}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, buds, flowers and immature siliques, and, to a lower extent, in roots. {ECO:0000269|PubMed:11161017, ECO:0000269|PubMed:17307931}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Binds to the 3'-ACC-5' repeats in the light-responsive promoter (LRP) of psbD, and activates its transcription. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:11161017, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013638773.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC232459 | 0.0 | AC232459.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB020F06, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013638773.1 | 0.0 | PREDICTED: transcription factor TCP13 isoform X1 | ||||
Swissprot | Q9S7W5 | 1e-152 | TCP13_ARATH; Transcription factor TCP13 | ||||
TrEMBL | A0A0D3CNA7 | 0.0 | A0A0D3CNA7_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6ERH9 | 0.0 | A0A3P6ERH9_BRAOL; Uncharacterized protein (Fragment) | ||||
STRING | Bo5g152840.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9134 | 26 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.2 | 1e-118 | plastid transcription factor 1 |
Publications ? help Back to Top | |||
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