PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013638685.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TALE | ||||||||
Protein Properties | Length: 327aa MW: 36650.3 Da PI: 4.6906 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.1 | 1.5e-08 | 270 | 304 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yp++ ++ LA+ +gL+++q+ +WF N+R ++ XP_013638685.1 270 KWPYPTEGDKIALADATGLDQKQINNWFINQRKRH 304 569*****************************885 PP | |||||||
2 | ELK | 30.1 | 1.1e-10 | 224 | 245 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 +LK++LlrK++++++sLk EFs XP_013638685.1 224 DLKDRLLRKFGSRISSLKLEFS 245 69*******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 2.5E-22 | 84 | 128 | IPR005540 | KNOX1 |
Pfam | PF03790 | 5.2E-22 | 86 | 127 | IPR005540 | KNOX1 |
SMART | SM01256 | 8.6E-27 | 136 | 187 | IPR005541 | KNOX2 |
Pfam | PF03791 | 4.6E-25 | 140 | 186 | IPR005541 | KNOX2 |
SMART | SM01188 | 6.3E-5 | 224 | 245 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.83 | 224 | 244 | IPR005539 | ELK domain |
Pfam | PF03789 | 2.6E-7 | 224 | 245 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.374 | 244 | 307 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.58E-19 | 245 | 320 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.0E-12 | 246 | 311 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 9.8E-28 | 249 | 308 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.16E-11 | 256 | 308 | No hit | No description |
Pfam | PF05920 | 2.9E-17 | 264 | 303 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 282 | 305 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MDGMYGFHPT DGDYSDKAVL MMSPDNLMFP SDYQTLLCSS AGDNRVSDVF GSDELLSAAA 60 SALSSEAASI APEIPRNDDK VSLGIIKGKI ASHPLYPRLL QAYIDCQKVG APPEIACLLE 120 EIQRESHVHK QNVVPSSSCF GADPELDEFM ETYCDILVKY KSDLARPFDE ATTFLNKIET 180 QLRNLCTGVE SDRGLSDGAV SSDEELNGGD EILQDGKQIC EDRDLKDRLL RKFGSRISSL 240 KLEFSKKKKK GKLPKEARQA LLDWWNVHYK WPYPTEGDKI ALADATGLDQ KQINNWFINQ 300 RKRHWKPSEN MPFAMMDDSS GSFFTEE |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: First detected in torpedo stage embryos at the boundaries between the presumptive SAM and the cotyledons. Later expressed between the cotyledons and the meristem, and between the cotyledons. In seedlings, localised in stipules and at the boundaries between the SAM and the emerging primordia. Expressed at the site of lateral roots. {ECO:0000269|PubMed:16798887}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed predominantly in shoot apices of seedlings, and, to a lower extent, in rosette leaves. {ECO:0000269|PubMed:11311158}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013638685.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013638685.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like 6 isoform X1 | ||||
Refseq | XP_013717243.1 | 0.0 | homeobox protein knotted-1-like 6 isoform X2 | ||||
Swissprot | Q84JS6 | 0.0 | KNAT6_ARATH; Homeobox protein knotted-1-like 6 | ||||
TrEMBL | A0A3P6FD51 | 0.0 | A0A3P6FD51_BRAOL; Uncharacterized protein | ||||
STRING | Bra024591.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM835 | 27 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23380.1 | 0.0 | KNOTTED1-like homeobox gene 6 |
Publications ? help Back to Top | |||
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