PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013638604.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 219aa    MW: 24348.9 Da    PI: 4.6343
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013638604.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.6e-182070155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+A +a++ a+++++g
  XP_013638604.1 20 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFQTAEMAMRAHDVAALSIKG 70
                    68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-112070IPR001471AP2/ERF domain
PROSITE profilePS5103222.4712178IPR001471AP2/ERF domain
SMARTSM003805.9E-352184IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-212178IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.8E-312179IPR001471AP2/ERF domain
PRINTSPR003673.6E-102233IPR001471AP2/ERF domain
CDDcd000183.00E-312280No hitNo description
PRINTSPR003673.6E-104460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MVDSSSLGSD KEKKGGSKQP VYRGVRMRSW GKWVSEIREP RKKSRIWLGT FQTAEMAMRA  60
HDVAALSIKG SSAILNFPEL SDSLPRPVSL SPRDVRAAAT KAALMDFGTK QVRRHVRAES  120
ESNETATYDK GSESESNETA SSCVTSIDEE SRVSDDLERI VELPSLGTSL DESNEFAFYD  180
TLEDLVFMPS WLRGGPGDDF TYNNNDSPLN SVFDESFSW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-191679973Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013638604.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895651e-102AC189565.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH009C15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013638604.11e-160PREDICTED: ethylene-responsive transcription factor ERF043-like isoform X2
SwissprotQ9M0802e-93ERF43_ARATH; Ethylene-responsive transcription factor ERF043
TrEMBLA0A0D3A2H41e-156A0A0D3A2H4_BRAOL; Uncharacterized protein
STRINGBo1g009990.11e-156(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.18e-96ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]