PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013638560.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 266aa    MW: 30470.8 Da    PI: 7.9061
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013638560.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_150.54.6e-16178234258
                     XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                     ++ +r++r++kNRe+A rsR+RK+a++ eLe+ +++Le eN++L ke+ee + e +k
  XP_013638560.1 178 AAAQRQKRMIKNRESAARSRERKQAYQVELETLAAKLERENEQLLKEIEEKTRERYK 234
                     5789********************************************998777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR000417.8E-5729IPR001630cAMP response element binding (CREB) protein
Gene3DG3DSA:1.20.5.1706.4E-13176237No hitNo description
PRINTSPR000417.8E-5176192IPR001630cAMP response element binding (CREB) protein
SMARTSM003381.4E-12177242IPR004827Basic-leucine zipper domain
PfamPF001701.0E-14178236IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.208179231IPR004827Basic-leucine zipper domain
CDDcd147075.15E-16181227No hitNo description
SuperFamilySSF579596.06E-10181232No hitNo description
PROSITE patternPS000360184199IPR004827Basic-leucine zipper domain
PRINTSPR000417.8E-5194214IPR001630cAMP response element binding (CREB) protein
PRINTSPR000417.8E-5214231IPR001630cAMP response element binding (CREB) protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MASFKMMSSS TSRNSDLSRR NSSSASSSPT VRSNHLRRDP HADHSKITFA YGGGNDATLH  60
DYNFASDSLD VDRSNGDRNS VNGGGRKSVD DVWKEIVSGE KKTVLKEEAQ DEYMMTLEDF  120
LAQAAEMNGN DDEIDVKIPM NTFDYPKMPQ QQHNQVEMVE GSTRRKRGRV MVEAMDKAAA  180
QRQKRMIKNR ESAARSRERK QAYQVELETL AAKLERENEQ LLKEIEEKTR ERYKNLMEQL  240
IPVDDEKRKP SSSASRSLSR SHSWEW
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013638560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013638560.10.0PREDICTED: G-box-binding factor 4
SwissprotP427771e-109GBF4_ARATH; G-box-binding factor 4
TrEMBLA0A0D3C7F40.0A0A0D3C7F4_BRAOL; Uncharacterized protein
STRINGBo5g004230.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38522855
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03970.11e-100G-box binding factor 4