PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013638559.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 629aa    MW: 69949.2 Da    PI: 5.5902
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013638559.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.18.4e-08523570448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      W   E + lv++v ++G g W+ I r       +Rt+ ++k++w+++l
   XP_013638559.1 523 WCLSEVKNLVEGVSKYGVGKWSVIKRLSYssfPHRTPVDLKDKWRNLL 570
                      77789999******************9999999*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.777515574IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-12516573IPR009057Homeodomain-like
SuperFamilySSF466892.69E-15517572IPR009057Homeodomain-like
SMARTSM007175.6E-6519572IPR001005SANT/Myb domain
CDDcd116601.12E-19521571No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
MGGMFGSVED YGEMFQDAVA HTSGASLSSE NQIENPVVYK LVRVAQDGRL VPATDEEMLE  60
VKDLVENNEN DMSVVPDPGQ YEYITNEGSP SQFLQLDSLE GLFQSETAEA YTDNLNSRLE  120
VCPPPLELLQ SKEELVYGSQ MPFPLLDTNY HSSNELPGDE EFVLSEVLLQ EPVCFSSDGC  180
GIDQPMDVSP YSNAAGGSPK APAVSTTASS PGASRDTEEI CLGNLSIKAL QDTFRATFGR  240
ETTCKDKLWL QRKIKMGRVN PCVIPTTSQT VNDNKLILGG QDNCNDTSVD EGRASNCKGT  300
PSSPNDFVKG HPNDFEYSPV EAFVDHYSGN EDFEGEYRSA KRVRKATRRY IEEISKVDDE  360
KQESKESLIP SKDERSISTV SSGRRVVVTR MVSLGGSIIQ VPYVSHVRRS RPRENIMALG  420
EFHSKSWEVK AMPEESNLSV SQSQLNSDVK RVSGVKSVSG PDQKKLTTHR QSYKDHSKPE  480
VDEDIMEPEY MDSSGDSSDD SSYNRVDRPV TQSAMRRKHH RAWCLSEVKN LVEGVSKYGV  540
GKWSVIKRLS YSSFPHRTPV DLKDKWRNLL KACFARAPLN KMGSMRKYGS MAIPSEVLSE  600
VRELAQKKSH VSPARKARMV KASSRHGFL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013638559.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013638558.10.0PREDICTED: uncharacterized protein LOC106343795
RefseqXP_013638559.10.0PREDICTED: uncharacterized protein LOC106343795
TrEMBLA0A078IGK90.0A0A078IGK9_BRANA; BnaC05g13570D protein
STRINGBo5g023810.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.10.0TRF-like 3