PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013638558.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB_related | ||||||||
Protein Properties | Length: 629aa MW: 69949.2 Da PI: 5.5902 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.1 | 8.4e-08 | 523 | 570 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 W E + lv++v ++G g W+ I r +Rt+ ++k++w+++l XP_013638558.1 523 WCLSEVKNLVEGVSKYGVGKWSVIKRLSYssfPHRTPVDLKDKWRNLL 570 77789999******************9999999*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.777 | 515 | 574 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-12 | 516 | 573 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.69E-15 | 517 | 572 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.6E-6 | 519 | 572 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.12E-19 | 521 | 571 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 629 aa Download sequence Send to blast |
MGGMFGSVED YGEMFQDAVA HTSGASLSSE NQIENPVVYK LVRVAQDGRL VPATDEEMLE 60 VKDLVENNEN DMSVVPDPGQ YEYITNEGSP SQFLQLDSLE GLFQSETAEA YTDNLNSRLE 120 VCPPPLELLQ SKEELVYGSQ MPFPLLDTNY HSSNELPGDE EFVLSEVLLQ EPVCFSSDGC 180 GIDQPMDVSP YSNAAGGSPK APAVSTTASS PGASRDTEEI CLGNLSIKAL QDTFRATFGR 240 ETTCKDKLWL QRKIKMGRVN PCVIPTTSQT VNDNKLILGG QDNCNDTSVD EGRASNCKGT 300 PSSPNDFVKG HPNDFEYSPV EAFVDHYSGN EDFEGEYRSA KRVRKATRRY IEEISKVDDE 360 KQESKESLIP SKDERSISTV SSGRRVVVTR MVSLGGSIIQ VPYVSHVRRS RPRENIMALG 420 EFHSKSWEVK AMPEESNLSV SQSQLNSDVK RVSGVKSVSG PDQKKLTTHR QSYKDHSKPE 480 VDEDIMEPEY MDSSGDSSDD SSYNRVDRPV TQSAMRRKHH RAWCLSEVKN LVEGVSKYGV 540 GKWSVIKRLS YSSFPHRTPV DLKDKWRNLL KACFARAPLN KMGSMRKYGS MAIPSEVLSE 600 VRELAQKKSH VSPARKARMV KASSRHGFL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013638558.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013638558.1 | 0.0 | PREDICTED: uncharacterized protein LOC106343795 | ||||
Refseq | XP_013638559.1 | 0.0 | PREDICTED: uncharacterized protein LOC106343795 | ||||
TrEMBL | A0A078IGK9 | 0.0 | A0A078IGK9_BRANA; BnaC05g13570D protein | ||||
STRING | Bo5g023810.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4364 | 26 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17460.1 | 0.0 | TRF-like 3 |