PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013638509.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 357aa MW: 39487.9 Da PI: 9.2863

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013638509.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	56.3	5.5e-18	283	332	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lr+l+P++ ++K +Ka+ L +++eYI+ Lq XP_013638509.1 283 RSKHSATEQRRRSKINDRFQMLRQLIPNS----DQKRDKASFLLEVIEYIQFLQ 332 889***********************9....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	9.0E-24	280	353	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.225	281	331	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.93E-19	282	352	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.92E-15	283	334	No hit	No description
Pfam	PF00010	1.8E-15	283	332	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.4E-13	287	337	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MELPQPRPFK AQGRKPTHDF LSLCSHPTLQ PDPNPTPPPS SQGSHLKTHD FLQPLDCVGA 60 KEETSRVDTT RIASEKPPPP APPPPLQHVL PGGIGTYTIS PIPYFHNQQR IPKPELSPPM 120 MFTAAAQAGG GNERNVVDEI SNSNSSSYAA AASGFTLWDE SGSGKKGQTR KENNAGERAS 180 IRADGAATMG QWPAVERRSQ SLTNTPLSGF SSRSSSQGSG LKSQSFMDML RSAKGTSQDD 240 DLDDEEDFVT KKESSSTSQI HRDLRVKAEA RGVGNDQKLN TPRSKHSATE QRRRSKINDR 300 FQMLRQLIPN SDQKRDKASF LLEVIEYIQF LQEKTSKYET PYQGWNHEPA KLLNWVN

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MELPQPRPFK AQGRKPTHDF LSLCSHPTLQ PDPNPTPPPS SQGSHLKTHD FLQPLDCVGA  60
KEETSRVDTT RIASEKPPPP APPPPLQHVL PGGIGTYTIS PIPYFHNQQR IPKPELSPPM  120
MFTAAAQAGG GNERNVVDEI SNSNSSSYAA AASGFTLWDE SGSGKKGQTR KENNAGERAS  180
IRADGAATMG QWPAVERRSQ SLTNTPLSGF SSRSSSQGSG LKSQSFMDML RSAKGTSQDD  240
DLDDEEDFVT KKESSSTSQI HRDLRVKAEA RGVGNDQKLN TPRSKHSATE QRRRSKINDR  300
FQMLRQLIPN SDQKRDKASF LLEVIEYIQF LQEKTSKYET PYQGWNHEPA KLLNWVN

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269\|PubMed:15680330}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013638509.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013638509.1	0.0	PREDICTED: transcription factor BIM1-like isoform X1
Swissprot	Q9LEZ3	0.0	BIM1_ARATH; Transcription factor BIM1
TrEMBL	A0A0D3CAD2	0.0	A0A0D3CAD2_BRAOL; Uncharacterized protein
STRING	Bo5g020460.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6967	27	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.4	1e-170	bHLH family protein

Publications ? help Back to Top
Liang T, et al. UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis. Dev. Cell, 2018. 44(4): p. 512-523.e5 [PMID:29398622]