PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013638293.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | BBR-BPC | ||||||||
Protein Properties | Length: 269aa MW: 30332.6 Da PI: 10.197 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 332.3 | 1.3e-101 | 1 | 269 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepa.aslkenlglqlmssiaerdaki....rernlalsekkaavaerd.....maflqrdkalaernkalverdnkllall 85 mdddg+ rn+gyyepa a++k nlglqlm si +r++k+ r+ nl +++++++++++ m++ +++++ +++k++++l XP_013638293.1 1 MDDDGF--RNWGYYEPAaATFKGNLGLQLMPSI-DRNTKPfltgRDPNL-MIGQNGPYHHQPeppinMSY----NWINQ-------HKDKFFNML 80 99**99..9*******999**************.9**************.*********99988888888....*****.......789****** PP GAGA_bind 86 lvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkk 180 +v++s ++ ++l++t+s++s+++ ++ +e+ +v+ ++++ee ++++k++k + ++ ++++k+kk +k+k++s+ks XP_013638293.1 81 PVTTS-----NNYGNILPETSSAQSMRH--HQTIEEYPVK--------HEQVEEIVQTNKKRKPN--TKPGASAKAKKPRKPKEESDKS------ 152 *9997.....56788*********7765..8888888877........22333433333333333..4667888888888888833222...... PP GAGA_bind 181 esaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaae 275 ++k+ kks+d+v+ngv++D+s lPvPvC+CtGa++qCY+WG+GGWqSaCCtt+iS++PLP+stkrrgaRi+grKmSqgafkk+LekLa++ XP_013638293.1 153 ----IKVKQAKKSVDFVINGVNMDISDLPVPVCTCTGAPQQCYRWGCGGWQSACCTTNISMHPLPMSTKRRGARISGRKMSQGAFKKVLEKLASD 243 ....3478899************************************************************************************ PP GAGA_bind 276 GydlsnpvDLkdhWAkHGtnkfvtir 301 G++++np+DLk+hWA+HGtnkfvtir XP_013638293.1 244 GFNFGNPIDLKSHWARHGTNKFVTIR 269 *************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 3.5E-155 | 1 | 269 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 1.1E-93 | 1 | 269 | IPR010409 | GAGA-binding transcriptional activator |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 269 aa Download sequence Send to blast |
MDDDGFRNWG YYEPAAATFK GNLGLQLMPS IDRNTKPFLT GRDPNLMIGQ NGPYHHQPEP 60 PINMSYNWIN QHKDKFFNML PVTTSNNYGN ILPETSSAQS MRHHQTIEEY PVKHEQVEEI 120 VQTNKKRKPN TKPGASAKAK KPRKPKEESD KSIKVKQAKK SVDFVINGVN MDISDLPVPV 180 CTCTGAPQQC YRWGCGGWQS ACCTTNISMH PLPMSTKRRG ARISGRKMSQ GAFKKVLEKL 240 ASDGFNFGNP IDLKSHWARH GTNKFVTIR |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal and petal vasculature, in pollen grains, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013638293.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC189499 | 0.0 | AC189499.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB086M23, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013638293.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE2-like | ||||
Swissprot | Q9LDE2 | 1e-154 | BPC2_ARATH; Protein BASIC PENTACYSTEINE2 | ||||
TrEMBL | A0A0D3CA79 | 0.0 | A0A0D3CA79_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6F3D9 | 0.0 | A0A3P6F3D9_BRAOL; Uncharacterized protein (Fragment) | ||||
STRING | Bo5g019930.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2893 | 27 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G14685.3 | 1e-154 | basic pentacysteine 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|