PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013638144.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 377aa    MW: 42341.5 Da    PI: 6.6544
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013638144.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.57.3e-3447101155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kprl+Wtp+LHerF+eav+qLGG++kAtPkti+++m+++gLtl+h+kSHLQkYRl
  XP_013638144.1  47 KPRLKWTPDLHERFIEAVNQLGGADKATPKTIMKVMGIPGLTLYHLKSHLQKYRL 101
                     79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.22744104IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-3145102IPR009057Homeodomain-like
SuperFamilySSF466894.3E-1746102IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-2347102IPR006447Myb domain, plants
PfamPF002494.3E-1049100IPR001005SANT/Myb domain
PfamPF143791.0E-15148188IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MYYQNQHQGK SILSSSRMHL PSERHPFLRG GNNSPGDSGL ILSTDAKPRL KWTPDLHERF  60
IEAVNQLGGA DKATPKTIMK VMGIPGLTLY HLKSHLQKYR LSKNLNGQGN SGLNKIGMIT  120
MIEEKSPDAD EIQSESLSIG PQPNKNSPIS EALQMQIEVQ RRLHEQLELR IEAQGKYLQS  180
VLEKAQETLG RQNLSPAGIE AAKVQLSELV SKVSAEYPNT SFLDSKEFQN LCPQQMQTAY  240
PQDSCLTSSE GAQKNPKMLG LRTYLGDSTS EQKEVIEEPL FQRMELTWTE GLRGNPYLST  300
MVSDAEQRIS LGVGMHGHRG HQQGNNAYNK EERFNDKSED HKLETQSTKT ELDLNTHVEN  360
YCTTGPKQFD LNGFSWN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A9e-2146103158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B9e-2146103158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A9e-2147103157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B9e-2147103157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C9e-2147103157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D9e-2147103157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A9e-2146103158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C9e-2146103158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D9e-2146103158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F9e-2146103158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H9e-2146103158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J9e-2146103158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in phloem and/or cambium. {ECO:0000269|PubMed:15923329}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00331DAPTransfer from AT3G04030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013638144.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0745630.0AY074563.1 Arabidopsis thaliana AT3g04030/T11I18_14 mRNA, complete cds.
GenBankAY1439150.0AY143915.1 Arabidopsis thaliana At3g04030/T11I18_14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013638144.10.0PREDICTED: two-component response regulator ARR18 isoform X3
SwissprotQ9SQQ90.0PHL9_ARATH; Myb-related protein 2
TrEMBLA0A3P6FYP10.0A0A3P6FYP1_BRAOL; Uncharacterized protein
STRINGBra031952.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.10.0G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]