PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013638142.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | G2-like | ||||||||
Protein Properties | Length: 383aa MW: 43103.4 Da PI: 6.8492 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107.5 | 7.4e-34 | 47 | 101 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerF+eav+qLGG++kAtPkti+++m+++gLtl+h+kSHLQkYRl XP_013638142.1 47 KPRLKWTPDLHERFIEAVNQLGGADKATPKTIMKVMGIPGLTLYHLKSHLQKYRL 101 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.227 | 44 | 104 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-31 | 45 | 102 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.48E-17 | 46 | 102 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.1E-23 | 47 | 102 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.4E-10 | 49 | 100 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 5.4E-26 | 148 | 194 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MYYQNQHQGK SILSSSRMHL PSERHPFLRG GNNSPGDSGL ILSTDAKPRL KWTPDLHERF 60 IEAVNQLGGA DKATPKTIMK VMGIPGLTLY HLKSHLQKYR LSKNLNGQGN SGLNKIGMIT 120 MIEEKSPDAD EIQSESLSIG PQPNKNSPIS EALQMQIEVQ RRLHEQLEVQ RHLQLRIEAQ 180 GKYLQSVLEK AQETLGRQNL SPAGIEAAKV QLSELVSKVS AEYPNTSFLD SKEFQNLCPQ 240 QMQTAYPQDS CLTSSEGAQK NPKMLGLRTY LGDSTSEQKE VIEEPLFQRM ELTWTEGLRG 300 NPYLSTMVSD AEQRISLGVG MHGHRGHQQG NNAYNKEERF NDKSEDHKLE TQSTKTELDL 360 NTHVENYCTT GPKQFDLNGF SWN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-20 | 46 | 103 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-20 | 46 | 103 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 1e-20 | 47 | 103 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-20 | 47 | 103 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-20 | 47 | 103 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-20 | 47 | 103 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-20 | 46 | 103 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-20 | 46 | 103 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-20 | 46 | 103 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-20 | 46 | 103 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-20 | 46 | 103 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-20 | 46 | 103 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in phloem and/or cambium. {ECO:0000269|PubMed:15923329}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00331 | DAP | Transfer from AT3G04030 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013638142.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ222089 | 0.0 | HQ222089.1 Arabidopsis thaliana myb family transcription factor (MYR2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013638142.1 | 0.0 | PREDICTED: two-component response regulator ARR18 isoform X1 | ||||
Swissprot | Q9SQQ9 | 0.0 | PHL9_ARATH; Myb-related protein 2 | ||||
TrEMBL | A0A3P6FYP1 | 0.0 | A0A3P6FYP1_BRAOL; Uncharacterized protein | ||||
STRING | Bra031952.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3336 | 27 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04030.3 | 0.0 | G2-like family protein |
Publications ? help Back to Top | |||
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