PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013637770.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 384aa MW: 40743.4 Da PI: 5.6722 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 65.4 | 1e-20 | 277 | 339 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkr+rrk++NRe+ArrsR+RK+ae++eL++++++L +eN +L++e+++l+ + ++l +e+ XP_013637770.1 277 ERELKRQRRKESNRESARRSRLRKQAECDELAQRADVLNGENASLREEINKLRSQHEELVAEN 339 89******************************************************9998876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 4.1E-29 | 1 | 99 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Pfam | PF16596 | 1.4E-35 | 138 | 255 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 8.6E-17 | 269 | 335 | No hit | No description |
SMART | SM00338 | 1.9E-19 | 277 | 341 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 3.7E-19 | 277 | 339 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 12.84 | 279 | 342 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.69E-11 | 280 | 335 | No hit | No description |
CDD | cd14702 | 2.39E-23 | 282 | 332 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 284 | 299 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 384 aa Download sequence Send to blast |
MGSSEVDKSG EENEPKTPPP PSSAPVTSQE PSSAVATPDW SGFQAYSPMP PPHGYVASSP 60 QPHPYMWGVQ HMMPPYGTPP HPYVAMYPPG GMYAHPSLPP GSYPYSPYAM PSPNGMAEAS 120 GNTGSGVEGD GKQAEAKEKL PIKRSKGSLG SLNMIIGKKN EAGKNSGASA NGACSKSAES 180 GSDGTSEGSD ANSQNDSGSR HNGKDGETAS DSAQGPPRNG SNQPVNQIVP VTPVSATGVP 240 APPTNLNMGM DYWSGHGTTV PGVVVDGSQS QTWVQDEREL KRQRRKESNR ESARRSRLRK 300 QAECDELAQR ADVLNGENAS LREEINKLRS QHEELVAENS ALKNRFSTVR SLEGVNLDGK 360 EQEPETSTRQ DVAETTRGSY NNSA |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 293 | 299 | RRSRLRK |
2 | 293 | 300 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00173 | DAP | Transfer from AT1G32150 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013637770.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK353505 | 0.0 | AK353505.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-47-I14. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013637770.1 | 0.0 | PREDICTED: transcription factor HBP-1a | ||||
Swissprot | Q84LG2 | 0.0 | BZP68_ARATH; bZIP transcription factor 68 | ||||
TrEMBL | A0A0D3CDL9 | 0.0 | A0A0D3CDL9_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g048660.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3701 | 25 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G32150.1 | 1e-178 | basic region/leucine zipper transcription factor 68 |
Publications ? help Back to Top | |||
---|---|---|---|
|