PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013637675.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 653aa MW: 73952.7 Da PI: 6.5138 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.5 | 2.5e-53 | 14 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lp GfrF+Ptdeel+++yL+ k++g++le+ +vi+e+d++k+ePwdLp + +k++++ew+fF++rd+ky++g+r+nrat+ gyWkatgkd++++ XP_013637675.1 14 LPLGFRFRPTDEELINHYLRLKINGRDLEV-RVIPEIDVCKWEPWDLPglSVIKTDDQEWFFFCPRDRKYPSGHRSNRATDIGYWKATGKDRTIK 107 699***************************.99***************6448899999************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 s k+ +g+kktLvfy+grap+ge+t+W+mheyr+ XP_013637675.1 108 S-KKMIIGMKKTLVFYRGRAPRGERTNWIMHEYRA 141 *.9999***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.71E-64 | 5 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.648 | 14 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-27 | 15 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 653 aa Download sequence Send to blast |
MATETQATLS MESLPLGFRF RPTDEELINH YLRLKINGRD LEVRVIPEID VCKWEPWDLP 60 GLSVIKTDDQ EWFFFCPRDR KYPSGHRSNR ATDIGYWKAT GKDRTIKSKK MIIGMKKTLV 120 FYRGRAPRGE RTNWIMHEYR ATDKDLDGTG PGQSPYVLCR LFHKPSDVAN CDEVENVNAT 180 PTTTRCSRED NSSEMVQETA TSRVHAQNIS DDTERCPSDK GSDVKPDAPV IKTENHGETS 240 RAKDRGKSIV EESPFARDFS SLYGPSFDQT SYTPVPSSIG FPASHMDSMY SSDFGNCHYG 300 LHFQDGAAIQ DESLADVLDE VFHNHNQSST EPKDFALPKM MHWSFPRDTF GFVNGSAEAS 360 FPQFAPDVGA SRLASDHYVD SKEAVEIQSS SGSSRTVTPL HSNVLGQHPP VSYATMDPFN 420 SNVNQPEQEQ LPVDRNIILS EFNARARETQ TDLDFVVNQG TAPRRIRLQI EQPFTPVNNE 480 KERDVDNHEE EEVQSAMTMI VEEDEKCFLD KDKSRAQGHA SLSEATNLNT QGTAHRRIRL 540 QTRIRKLPII PKNTGRDSNH SEEVAMHSKE KEDVSASSSS SWQQHKLMRK RMVKCSSMVV 600 IMAVMVLLVG IWKESRYAKC SFLFHQLDSF KVSSDKAKFS RIFNKVVPPF FAV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-47 | 1 | 166 | 7 | 170 | NAC domain-containing protein 19 |
3swm_B | 2e-47 | 1 | 166 | 7 | 170 | NAC domain-containing protein 19 |
3swm_C | 2e-47 | 1 | 166 | 7 | 170 | NAC domain-containing protein 19 |
3swm_D | 2e-47 | 1 | 166 | 7 | 170 | NAC domain-containing protein 19 |
3swp_A | 2e-47 | 1 | 166 | 7 | 170 | NAC domain-containing protein 19 |
3swp_B | 2e-47 | 1 | 166 | 7 | 170 | NAC domain-containing protein 19 |
3swp_C | 2e-47 | 1 | 166 | 7 | 170 | NAC domain-containing protein 19 |
3swp_D | 2e-47 | 1 | 166 | 7 | 170 | NAC domain-containing protein 19 |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers. {ECO:0000269|PubMed:17158162}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013637675.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, heat and drought stresses. {ECO:0000269|PubMed:17158162}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF738269 | 0.0 | KF738269.1 Brassica napus NAC transcription factor 14 (NAC14.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013637675.1 | 0.0 | PREDICTED: NAC domain-containing protein 14 isoform X1 | ||||
Refseq | XP_022568275.1 | 0.0 | NAC domain-containing protein 14-like isoform X1 | ||||
Swissprot | B5X570 | 0.0 | NAC14_ARATH; NAC domain-containing protein 14 | ||||
TrEMBL | A0A078JK12 | 0.0 | A0A078JK12_BRANA; BnaCnng49700D protein | ||||
TrEMBL | A0A0D3CGK8 | 0.0 | A0A0D3CGK8_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g086780.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5594 | 28 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33060.1 | 0.0 | NAC 014 |