PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013637615.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 719aa    MW: 78952.3 Da    PI: 6.9381
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013637615.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.43.2e-0858100347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT +E+e +  a +q G++ +++I ++++  +   q++++++ +
   XP_013637615.1  58 AWTHQEEESFFTALRQVGKN-FAKITSRVQ-SKNKDQVRHYYYRL 100
                      6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.22E-1150105IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-553103IPR009057Homeodomain-like
PROSITE profilePS5129313.17554105IPR017884SANT domain
SMARTSM007174.6E-655103IPR001005SANT/Myb domain
CDDcd001671.55E-558101No hitNo description
PfamPF002491.9E-658100IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MLEKSCAMQA EKEVSLSSQG PIEEGRESNQ NSNPNIASSA SIAVPQFPAK KPTRQWAAWT  60
HQEEESFFTA LRQVGKNFAK ITSRVQSKNK DQVRHYYYRL VRRMNKLLGP ELSLDAKNPK  120
DTNAAMLRWW SLLEKYSCKA SKLHLKPRRF KLFLEALEHQ LLKDRRKSSR KRACHGESFS  180
SASLGNISSH SRERGLDSSP FKLILCDSQN VRPGRASTKH GESLGVRLGD EKEDTALGRA  240
GRQRRKQGYR KWEKAAIDGV SLVADAAEHL ERTSIDKDVN GQKDLGPTRY LTGKSPLSLP  300
SSGEAPLSDA NMQFSAKLKL QLFPIDESTR RSLEADKHNP HLELTLSNRK KISSVLEHLN  360
RKWGSSSCAC GELMLFPYNA RKETVALHQR WTNDSFLSAV EVYSMVGSPS LFRLRYGWFV  420
QDASGCLISQ VPTSASCPSL EDNMNVDDAN EVNMLLTESG PLSNKRPTSE QATSVACAAA  480
EARDNYEPAS AAITPFDHLN SGNTLSAGAW ADSLTNISIG DLLSEAPDCV DPPATEGSHC  540
LLRDVSFASD SFDAAIAAHI LRHQNKPSGL IPVTSGSSSL WDDEDTRDAF SFQKTRRANL  600
SKFADVASNG EPSQVVEATS GDEGPCNLPD QQGDPMEEGP ADPPTMGSPG KTIYGLADVY  660
WPDSLGPLDL DIRSSKYAED LNLSDSLGGL SRLIATSLDA FQNCSLFGFD SKKDKSNMV
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers, roots and leaves. {ECO:0000269|PubMed:15047893}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013637615.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013637615.10.0PREDICTED: TSL-kinase interacting protein 1 isoform X2
SwissprotQ8LJT80.0TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBLA0A0D3BRC50.0A0A0D3BRC5_BRAOL; Uncharacterized protein
STRINGBo4g031010.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.10.0TSL-kinase interacting protein 1