PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013637608.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family BES1
Protein Properties Length: 678aa    MW: 75879.3 Da    PI: 6.2619
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013637608.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF8221456.6e-45641941131
          DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssasaspessl 94 
                     ggs+r+++ +E+E++k+RER+RRai+a+i+ GLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++  s+ +   a +ags  sa+++s+ 
  XP_013637608.1  64 GGSRRSRPVEEKERTKLRERHRRAITARILGGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSKSQGTkPPAVVAGS--SAHQSSPP 156
                     689*******************************************************************666666222444444..45566666 PP

          DUF822  95 q.sslkssalaspvesysaspksssfpspssldsisla 131
                          + s  +sp+e   +++k +  p ps +d  s++
  XP_013637608.1 157 AlRGGSLSGHRSPTELNTCRMKGVFAPTPSPYDVQSSE 194
                     6335556889*********************9987654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056877.4E-3865189IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514452.36E-171230674IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.808.3E-186233675IPR013781Glycoside hydrolase, catalytic domain
PfamPF013732.7E-93239658IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-62270284IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-62291309IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-62313334IPR001554Glycoside hydrolase, family 14
PROSITE patternPS005060317325IPR018238Glycoside hydrolase, family 14, conserved site
PRINTSPR007501.2E-62406428IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-62479498IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-62513529IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-62530541IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-62548571IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-62588610IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MVTDTQKLLG TSEEDEEEEE MDADVKEEDD GDRRNRGSHA ASGSSNDEFM FQQSSMQDQV  60
DTPGGSRRSR PVEEKERTKL RERHRRAITA RILGGLRRHG NYNLRVRADI NDVIAALARE  120
AGWVVLPDGT TFPSKSQGTK PPAVVAGSSA HQSSPPALRG GSLSGHRSPT ELNTCRMKGV  180
FAPTPSPYDV QSSELVGSLN KADGLIGCSV DVINSKQILE IPPNMTEQDF SGTPYVPVYV  240
MLPLGVINMK CELADRDGLL KHLRILKSIQ VDGVKVDCWW GIAECHSPQE YNWNGYRQLF  300
QIVRDLNLKI QVLMSFHECG GNVGDDVCIP LPHWVAEIGR TNPDIYFTDR EGRRNPECLS  360
WGIDKERVLR GRTALEVYFD YMRSFRIELA EFVEDGVISM VEIGLGPCGE LRYPSCPIKH  420
GWRYPGVGEF QCYDKYLLKS LRKAAESRGH PFWARGPENA GSYNSQPQGT GFFCDGGDYD  480
GLYGRFFLKW YSQVLIDHAD KVLSLAKLVF DTSCIAAKLP DVHWWYRTAS HAAELTAGFY  540
NPSNRDGYAE IASTLKKHGA ALSFVSGEVQ VLNRPDDFSG ALGEPEAVAW QVFNAAWDTD  600
TPIARENSLP CHDRVGFNKM LESVKFPNDP DRRHLSSFAY SRLVPALMEG HNLVEFDRFV  660
KKLHGGAVMD HQHHHQQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-13823566511443Beta-amylase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013637608.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2273230.0AK227323.1 Arabidopsis thaliana mRNA for putative beta-amylase, complete cds, clone: RAFL14-01-P19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013637608.10.0PREDICTED: beta-amylase 7
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLA0A0D3BQ770.0A0A0D3BQ77_BRAOL; Beta-amylase
TrEMBLA0A3P6C9D30.0A0A3P6C9D3_BRAOL; Beta-amylase
STRINGBo4g025050.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29452535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]