PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013637593.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HSF | ||||||||
Protein Properties | Length: 475aa MW: 52690.4 Da PI: 5.8841 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 111.7 | 5e-35 | 27 | 117 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl k+ye+++d++++e++sws+n+nsf+v+++ ef+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF+++ F k++k+ll++ XP_013637593.1 27 FLVKTYEMVDDSSTDEIVSWSSNNNSFIVWNHAEFSCVLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFSNDDFIKDQKHLLKN 112 9****************************************************************999.........****************** PP XXXXX CS HSF_DNA-bind 97 ikrkk 101 i+r+k XP_013637593.1 113 IHRRK 117 ***98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 5.9E-37 | 23 | 116 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 6.53E-35 | 23 | 116 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 3.3E-60 | 23 | 116 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-19 | 27 | 50 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 9.7E-30 | 27 | 116 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-19 | 65 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 66 | 90 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-19 | 78 | 90 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 475 aa Download sequence Send to blast |
MNGALGNSSA SVTGGGGGDG AGGPAPFLVK TYEMVDDSST DEIVSWSSNN NSFIVWNHAE 60 FSCVLLPTYF KHNNFSSFIR QLNTYGFRKI DPERWEFSND DFIKDQKHLL KNIHRRKPIH 120 SHSQPPVSSV DQERAALQEQ MDKLSREKAA IEAKLLKFEQ HKSTAKHNLD EMAEHVEDME 180 KRQEKLMSFL ETAMRNPTFI KNFGRKVEGL DVSAYNKKRR LPQGEQSKPP SEDSHLDNSS 240 GSSRPESGNI FHQNFSNKLR LELSPAVSDM NMVSHSIQSS NEGGASPKGI LSGSDPNTIQ 300 TRREGLPFAP EALELADTGS CPGILLLNDK TIPEPLQQMI TSSEETDGSF SCHLNLTLAS 360 APLPDKTASQ IAKTTHKSQE IGRVTELNFN SIETSASEKN RGQQEVAAGG KLTNAAPPAR 420 VNDVFWEQFL TERPGSSDNE EASSTYRENP CEEQEEKRNG HVMSRNTKNI EQLTL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 3e-23 | 18 | 116 | 17 | 129 | Heat shock factor protein 1 |
5d5v_B | 3e-23 | 18 | 116 | 17 | 129 | Heat shock factor protein 1 |
5d5v_D | 3e-23 | 18 | 116 | 17 | 129 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013637593.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013637590.1 | 0.0 | PREDICTED: heat stress transcription factor A-5 | ||||
Refseq | XP_013637593.1 | 0.0 | PREDICTED: heat stress transcription factor A-5 | ||||
Swissprot | Q94BZ5 | 0.0 | HSFA5_ARATH; Heat stress transcription factor A-5 | ||||
TrEMBL | A0A0D3BYU1 | 0.0 | A0A0D3BYU1_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g128450.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13980.1 | 0.0 | HSF family protein |
Publications ? help Back to Top | |||
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