PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013637590.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HSF

Protein Properties

Length: 475aa MW: 52690.4 Da PI: 5.8841

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013637590.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	111.7	5e-35	27	117	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl k+ye+++d++++e++sws+n+nsf+v+++ ef+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF+++ F k++k+ll++ XP_013637590.1 27 FLVKTYEMVDDSSTDEIVSWSSNNNSFIVWNHAEFSCVLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFSNDDFIKDQKHLLKN 112 9**************************************************************999.........************** PP XXXXX CS HSF_DNA-bind 97 ikrkk 101 i+r+k XP_013637590.1 113 IHRRK 117 *98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	5.9E-37	23	116	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	6.53E-35	23	116	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	3.3E-60	23	116	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.1E-19	27	50	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	9.7E-30	27	116	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.1E-19	65	77	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	66	90	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.1E-19	78	90	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
MNGALGNSSA SVTGGGGGDG AGGPAPFLVK TYEMVDDSST DEIVSWSSNN NSFIVWNHAE 60 FSCVLLPTYF KHNNFSSFIR QLNTYGFRKI DPERWEFSND DFIKDQKHLL KNIHRRKPIH 120 SHSQPPVSSV DQERAALQEQ MDKLSREKAA IEAKLLKFEQ HKSTAKHNLD EMAEHVEDME 180 KRQEKLMSFL ETAMRNPTFI KNFGRKVEGL DVSAYNKKRR LPQGEQSKPP SEDSHLDNSS 240 GSSRPESGNI FHQNFSNKLR LELSPAVSDM NMVSHSIQSS NEGGASPKGI LSGSDPNTIQ 300 TRREGLPFAP EALELADTGS CPGILLLNDK TIPEPLQQMI TSSEETDGSF SCHLNLTLAS 360 APLPDKTASQ IAKTTHKSQE IGRVTELNFN SIETSASEKN RGQQEVAAGG KLTNAAPPAR 420 VNDVFWEQFL TERPGSSDNE EASSTYRENP CEEQEEKRNG HVMSRNTKNI EQLTL

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

MNGALGNSSA SVTGGGGGDG AGGPAPFLVK TYEMVDDSST DEIVSWSSNN NSFIVWNHAE  60
FSCVLLPTYF KHNNFSSFIR QLNTYGFRKI DPERWEFSND DFIKDQKHLL KNIHRRKPIH  120
SHSQPPVSSV DQERAALQEQ MDKLSREKAA IEAKLLKFEQ HKSTAKHNLD EMAEHVEDME  180
KRQEKLMSFL ETAMRNPTFI KNFGRKVEGL DVSAYNKKRR LPQGEQSKPP SEDSHLDNSS  240
GSSRPESGNI FHQNFSNKLR LELSPAVSDM NMVSHSIQSS NEGGASPKGI LSGSDPNTIQ  300
TRREGLPFAP EALELADTGS CPGILLLNDK TIPEPLQQMI TSSEETDGSF SCHLNLTLAS  360
APLPDKTASQ IAKTTHKSQE IGRVTELNFN SIETSASEKN RGQQEVAAGG KLTNAAPPAR  420
VNDVFWEQFL TERPGSSDNE EASSTYRENP CEEQEEKRNG HVMSRNTKNI EQLTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	3e-23	18	116	17	129	Heat shock factor protein 1
5d5v_B	3e-23	18	116	17	129	Heat shock factor protein 1
5d5v_D	3e-23	18	116	17	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013637590.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013637590.1	0.0	PREDICTED: heat stress transcription factor A-5
Refseq	XP_013637593.1	0.0	PREDICTED: heat stress transcription factor A-5
Swissprot	Q94BZ5	0.0	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	A0A0D3BYU1	0.0	A0A0D3BYU1_BRAOL; Uncharacterized protein
STRING	Bo4g128450.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10134	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	0.0	HSF family protein

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]