PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013637556.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 786aa    MW: 86407.9 Da    PI: 6.675
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013637556.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.85.9e-21104159156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++eLe++F+++++p++++r +L+++l+L++rqVk+WFqNrR+++k
  XP_013637556.1 104 KKRYHRHTPQQIQELESVFKECPHPDEKQRLDLSRRLNLDTRQVKFWFQNRRTQMK 159
                     688999***********************************************999 PP
2START181.64.5e-573075341206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 
                     ela +a++elvk+a+ +ep+W +ss    e++n++e+ ++f +          + +ea++++g+v+ ++  lve+l+d+  +W e+++    k +
  XP_013637556.1 307 ELAVSAMDELVKMAQTSEPLWIQSSkgkrEMLNREEYDKSFRS--ClgpkpdgFVSEASKEVGMVIINSLALVETLMDSE-RWAEMFPcmiaKNS 398
                     57899********************999988888888888854..145999999**************************.************** PP

                     EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEE CS
           START  81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvt 165
                     t+e issg      ga++lm+aelq+lsplvp R ++f+R+++q+ +g+w++vdvSvd  +++       s+  +++lpSg+l+++++ng+ kvt
  XP_013637556.1 399 TIEIISSGmggtrnGAIHLMQAELQLLSPLVPvRQVTFLRFCKQHAEGVWAVVDVSVDRISERGGsasARSSLSCRRLPSGCLVHDMPNGYAKVT 493
                     *********************************************************98777765557778889********************* PP

                     EEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 166 wvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     w++h+++++  +h  +r+lv+sgla+g k+wv++lqrqce+
  XP_013637556.1 494 WIDHTEYDETNIHHSYRPLVSSGLAFGSKRWVSALQRQCES 534
                     ***************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.61E-2189161IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.4E-2192161IPR009057Homeodomain-like
PROSITE profilePS5007117.621101161IPR001356Homeobox domain
SMARTSM003894.9E-20102165IPR001356Homeobox domain
CDDcd000862.63E-19104161No hitNo description
PfamPF000461.4E-18104159IPR001356Homeobox domain
PROSITE patternPS000270136159IPR017970Homeobox, conserved site
PROSITE profilePS5084844.427298537IPR002913START domain
SuperFamilySSF559612.33E-28301535No hitNo description
CDDcd088751.64E-115302533No hitNo description
SMARTSM002344.1E-47307534IPR002913START domain
PfamPF018522.2E-49308534IPR002913START domain
SuperFamilySSF559612.88E-21564778No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 786 aa     Download sequence    Send to blast
MNFSGFLHHD DDKTSGGETV GGGNNFFSPA AAMSGGPVQF SSPRLSLGLP TNVENKGGEV  60
GRTGESYEVS VTRRSPESRS GSDNVEALSG EDDLDASDRP LKKKKRYHRH TPQQIQELES  120
VFKECPHPDE KQRLDLSRRL NLDTRQVKFW FQNRRTQMKT QIERHENSLL RQENDKLRAE  180
NMSVREAMRN PMCGHCGASA VLGEISLEEH QLRIENSRLK DELDRLCALA GKFINRSDDA  240
GSHQLPNSTL KLGVGSRNVD AGGGFTLLHP VFEIPSSHFY SGLNALVNRT GTDIASGGVD  300
EKSLYLELAV SAMDELVKMA QTSEPLWIQS SKGKREMLNR EEYDKSFRSC LGPKPDGFVS  360
EASKEVGMVI INSLALVETL MDSERWAEMF PCMIAKNSTI EIISSGMGGT RNGAIHLMQA  420
ELQLLSPLVP VRQVTFLRFC KQHAEGVWAV VDVSVDRISE RGGSASARSS LSCRRLPSGC  480
LVHDMPNGYA KVTWIDHTEY DETNIHHSYR PLVSSGLAFG SKRWVSALQR QCESLAILMS  540
SAIPNRNKPT PAISSIGKKS MLRLAQRMTE NFCRGVCASS SHKWSKLDIG NIDEDVRIMT  600
RKNVDDSGEP PGILLSAATS VWVPVTPRRL FDFLRDELLR SEWDILSNGG PMQEIANIFK  660
GQDHSNSVSL LRSTAMNASQ SSMLILQETS IDASGAVVVY APVDIPAMHA VMNGGDSAYV  720
ALLPSGFAIL PDDQGTEETG SLLTVAFQIL VNSLPTAKLN VESIETVSNL ISCTVQKIRA  780
ALRCDK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in trichomes forming at the base of young leaves, in endodermal cell lines around emergent lateral roots and in the epidermal layer of the stamen filament. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013637556.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013637556.10.0PREDICTED: homeobox-leucine zipper protein HDG1-like isoform X1
SwissprotQ9M2E80.0HDG1_ARATH; Homeobox-leucine zipper protein HDG1
TrEMBLA0A3P6BG640.0A0A3P6BG64_BRAOL; Uncharacterized protein
STRINGBo4g024940.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]