PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013637423.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 349aa MW: 38687.4 Da PI: 6.9566 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 111.6 | 1.1e-34 | 26 | 126 | 1 | 89 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...... 88 a+g+kdrhsk+ T++g+RdRRvRl a++a++f+d+qd+L +d++sk+++WL+++ak+ai++l t+ ++++++ +++ssss+ + + XP_013637423.1 26 ATGRKDRHSKVFTSKGPRDRRVRLAAHTAIQFYDVQDRLQYDRPSKAVDWLIKKAKAAIDKLETTQEPPENDTtKPGSSSSEPN-LADTqtqfva 119 589**************************************************************9999999964444444433.2111233444 PP TCP 89 ......k 89 + XP_013637423.1 120 anldpeD 126 5444431 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 6.0E-28 | 27 | 135 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 30.346 | 29 | 87 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 349 aa Download sequence Send to blast |
MGLKGYSAGD GVGEIIEVPG GHIIRATGRK DRHSKVFTSK GPRDRRVRLA AHTAIQFYDV 60 QDRLQYDRPS KAVDWLIKKA KAAIDKLETT QEPPENDTTK PGSSSSEPNL ADTQTQFVAA 120 NLDPEDAMKT FFPATTSGGG TNMNFQNYPH HHDADNIVSR TTTTTPNLSQ DLGLSLHPFQ 180 GNNINSTVVP ETNNFATAHF ETFGRISGWN HHDLTMTSSS SPSEQQQEQE RGNGGFMVNL 240 HHHQPSMMTL LNSQQQQVFL GGHQQQQQRG TLQSSLFPHS FRSWDHHHQT TSDNHHHHHH 300 NQASPVMFAS SSQYGSHGMM MMQGLSFPIH GEEPTQPNSS SSPPPNSHL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-20 | 34 | 87 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 2e-20 | 34 | 87 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: First observed in the distal and middle regions of cotyledons of heart-shaped embryos. Later localized in bending cotyledon, and mature embryos, but no signals were detected in the presumptive shoot apical meristem (SAM) and the boundary region during embryogenesis. Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. | |||||
Uniprot | TISSUE SPECIFICITY: Mostly detected in lateral organs, such as leaves and flowers. Expressed in cotyledons, particularly in the vascular region, in leaves, roots, stems, buds, flowers and immature siliques. {ECO:0000269|PubMed:11158442, ECO:0000269|PubMed:17307931}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013637423.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013637421.1 | 0.0 | PREDICTED: transcription factor TCP10 | ||||
Refseq | XP_013637422.1 | 0.0 | PREDICTED: transcription factor TCP10 | ||||
Refseq | XP_013637423.1 | 0.0 | PREDICTED: transcription factor TCP10 | ||||
Swissprot | O82277 | 1e-149 | TCP10_ARATH; Transcription factor TCP10 | ||||
TrEMBL | A0A0D3BTA8 | 0.0 | A0A0D3BTA8_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g053680.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G31070.1 | 1e-130 | TCP domain protein 10 |
Publications ? help Back to Top | |||
---|---|---|---|
|