PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013637415.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 284aa MW: 32019.6 Da PI: 4.4719 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.2 | 2e-10 | 135 | 182 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rEr RR+++N++f L ++l + + +K +K +iL A++ +++L XP_013637415.1 135 TKACRERLRREKLNDKFMDLSSVLEPG---RTPKTDKPAILDDAIRVLNQL 182 5678**********************8...8*****************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.519 | 131 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.74E-8 | 135 | 185 | No hit | No description |
Pfam | PF00010 | 9.0E-8 | 135 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.9E-10 | 137 | 188 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.85E-13 | 137 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-11 | 139 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MYPSLDDEDF VSDFFCFDQR NGAELDDYTQ FGVDLQPDQA GTFPDFGSYG VNLQSDPEQV 60 FSIGDLTSYG GVLTQEPGQF RNFGGPNDCG TVQEDEVVVN SSSSGGAVKQ EQEHVDEECS 120 RKRGRTGSCV RPGGTKACRE RLRREKLNDK FMDLSSVLEP GRTPKTDKPA ILDDAIRVLN 180 QLRDEAHELE ETNQKLLEEI KSLKAEKNEL REEKQALKAE KEKTEQQLKS MMVPSTGFMP 240 QIPAPFNQNK MAVYPSYGYM PMWHYLPQSV RDTSRDQELR PPAA |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00102 | PBM | Transfer from AT4G14410 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013637415.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353296 | 0.0 | AK353296.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-40-C06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013637415.1 | 0.0 | PREDICTED: transcription factor bHLH104 isoform X2 | ||||
Refseq | XP_013678511.1 | 0.0 | transcription factor bHLH104-like isoform X2 | ||||
Refseq | XP_013686728.1 | 0.0 | transcription factor bHLH104-like isoform X2 | ||||
Swissprot | Q8L467 | 1e-163 | BH104_ARATH; Transcription factor bHLH104 | ||||
TrEMBL | A0A078FEH2 | 0.0 | A0A078FEH2_BRANA; BnaC04g28710D protein | ||||
STRING | Bo4g126940.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14410.1 | 1e-142 | bHLH family protein |