PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013637277.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 333aa    MW: 37084.2 Da    PI: 7.0416
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013637277.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.44.1e-18232265134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C +C +tkTp+WR gp g+ktLCnaCG++y++ +
  XP_013637277.1 232 CMHCEVTKTPQWRLGPMGPKTLCNACGVRYKSGR 265
                     99*****************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.3E-931322IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.78226262IPR000679Zinc finger, GATA-type
SMARTSM004018.0E-16226276IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.5E-14230263IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.19E-14230289No hitNo description
CDDcd002022.09E-14231278No hitNo description
PROSITE patternPS003440232257IPR000679Zinc finger, GATA-type
PfamPF003204.3E-16232265IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009845Biological Processseed germination
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MFGQSFPEDL DCGNFFDNMD DLLDFPGGDI DVGFSIGDSD SFPNIWTTHH DTWPAASEPV  60
FASNTNSDSS PELYVPFEDI VKVERPQSFV EESLVEKKED SFFTNTDSSS SHSQFRSSSP  120
VSVLESSSSS SHTTNTTSLV LPGKHGRPRT KRPRPQVQEK DKVNDTVFGA DSRLIIRIPK  180
QFLSDHSKMI TKKKKKKAKV VSSSSWSEID LETNGNNNVD SCSSEQNPVR KCMHCEVTKT  240
PQWRLGPMGP KTLCNACGVR YKSGRLFPEY RPAASPTFTP ALHSNSHKKV AEMRNKRCSS  300
GSYTNEENDL HDLVLNNAYI GIGVGKSQRV DKF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150154KRPRP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013637277.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3534610.0AK353461.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-37-G07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013637276.10.0PREDICTED: GATA transcription factor 8 isoform X1
SwissprotQ9SV301e-168GATA8_ARATH; GATA transcription factor 8
TrEMBLA0A0D3BXX30.0A0A0D3BXX3_BRAOL; GATA transcription factor
TrEMBLA0A3P6C6I00.0A0A3P6C6I0_BRAOL; GATA transcription factor
STRINGBo4g118340.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.21e-139GATA family protein
Publications ? help Back to Top
  1. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]