PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013637267.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 463aa MW: 49823.5 Da PI: 8.9426 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 38.4 | 2.6e-12 | 327 | 385 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr +r NR++A rs +RK ++++eLe kv++L++e ++L +l +l+ + l++++ XP_013637267.1 327 KRVKRILANRVSAARSKERKTQYMAELEHKVQTLQSEATTLSAQLTHLQRDSMGLTNQN 385 899*********************************************99887777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 6.0E-20 | 323 | 387 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.955 | 325 | 388 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 5.0E-10 | 327 | 384 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 6.4E-12 | 327 | 383 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 2.0E-12 | 327 | 383 | No hit | No description |
CDD | cd14703 | 9.24E-23 | 328 | 377 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010628 | Biological Process | positive regulation of gene expression | ||||
GO:0010629 | Biological Process | negative regulation of gene expression | ||||
GO:0090567 | Biological Process | reproductive shoot system development | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 463 aa Download sequence Send to blast |
MGGGSGTDAS TMQRANSSSS SIPKQPAPIT PNHHLNPPLL RSPQPFSGGG GGGNRVGAPP 60 PIPSYSQIPA TLQLKHSRST SQPSSFFSFD SLPPLNPSPV SVEERNGAGF SPSLPPSPFT 120 MCHSSSRMVG GGDGENLPPR KSHRRSNSDV TFGFSSIMSP PLIPSRSLER SVSGGEVASD 180 WSNLVKEEPG EGGGRKKSES EAMDDVFRAY INLDNIDVLN SFGGNETVDS SDSEGESSVK 240 VSSGVKRRAG GDIVPTVRHY RSVSMDSGFM GKLDLGGDEK LPVKASPTNS GEGNSSVEFG 300 NSEFTAAEMK KISADEKLAE IVMADPKRVK RILANRVSAA RSKERKTQYM AELEHKVQTL 360 QSEATTLSAQ LTHLQRDSMG LTNQNNELKF RLQAMEQQAQ LRDALSEKLT EEVQRLKMVI 420 GETSSRSSSS RESNISKTTL SPEMFQQLSI SQQQMQHSKA QIK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 339 | 347 | ARSKERKTQ |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00037 | PBM | Transfer from AT2G21230 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013637267.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF401298 | 1e-136 | AF401298.1 Arabidopsis thaliana transcription factor bZIP30 (BZIP30) mRNA, complete cds. | |||
GenBank | AY054497 | 1e-136 | AY054497.1 Arabidopsis thaliana putative bZIP transcription factor (At2g21230; F7O24.5) mRNA, complete cds. | |||
GenBank | AY093268 | 1e-136 | AY093268.1 Arabidopsis thaliana putative bZIP transcription factor (At2g21230) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013637267.1 | 0.0 | PREDICTED: transcription factor RF2a-like | ||||
Refseq | XP_013637268.1 | 0.0 | PREDICTED: transcription factor RF2a-like | ||||
TrEMBL | A0A0D3C0Y6 | 0.0 | A0A0D3C0Y6_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g145800.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15625 | 14 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G21230.1 | 1e-160 | bZIP family protein |