PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013637267.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 463aa    MW: 49823.5 Da    PI: 8.9426
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013637267.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_138.42.6e-12327385563
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     kr +r   NR++A rs +RK ++++eLe kv++L++e ++L  +l +l+  +  l++++
  XP_013637267.1 327 KRVKRILANRVSAARSKERKTQYMAELEHKVQTLQSEATTLSAQLTHLQRDSMGLTNQN 385
                     899*********************************************99887777766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.0E-20323387IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.955325388IPR004827Basic-leucine zipper domain
PfamPF001705.0E-10327384IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.4E-12327383No hitNo description
Gene3DG3DSA:1.20.5.1702.0E-12327383No hitNo description
CDDcd147039.24E-23328377No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0010628Biological Processpositive regulation of gene expression
GO:0010629Biological Processnegative regulation of gene expression
GO:0090567Biological Processreproductive shoot system development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MGGGSGTDAS TMQRANSSSS SIPKQPAPIT PNHHLNPPLL RSPQPFSGGG GGGNRVGAPP  60
PIPSYSQIPA TLQLKHSRST SQPSSFFSFD SLPPLNPSPV SVEERNGAGF SPSLPPSPFT  120
MCHSSSRMVG GGDGENLPPR KSHRRSNSDV TFGFSSIMSP PLIPSRSLER SVSGGEVASD  180
WSNLVKEEPG EGGGRKKSES EAMDDVFRAY INLDNIDVLN SFGGNETVDS SDSEGESSVK  240
VSSGVKRRAG GDIVPTVRHY RSVSMDSGFM GKLDLGGDEK LPVKASPTNS GEGNSSVEFG  300
NSEFTAAEMK KISADEKLAE IVMADPKRVK RILANRVSAA RSKERKTQYM AELEHKVQTL  360
QSEATTLSAQ LTHLQRDSMG LTNQNNELKF RLQAMEQQAQ LRDALSEKLT EEVQRLKMVI  420
GETSSRSSSS RESNISKTTL SPEMFQQLSI SQQQMQHSKA QIK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1339347ARSKERKTQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00037PBMTransfer from AT2G21230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013637267.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4012981e-136AF401298.1 Arabidopsis thaliana transcription factor bZIP30 (BZIP30) mRNA, complete cds.
GenBankAY0544971e-136AY054497.1 Arabidopsis thaliana putative bZIP transcription factor (At2g21230; F7O24.5) mRNA, complete cds.
GenBankAY0932681e-136AY093268.1 Arabidopsis thaliana putative bZIP transcription factor (At2g21230) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013637267.10.0PREDICTED: transcription factor RF2a-like
RefseqXP_013637268.10.0PREDICTED: transcription factor RF2a-like
TrEMBLA0A0D3C0Y60.0A0A0D3C0Y6_BRAOL; Uncharacterized protein
STRINGBo4g145800.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156251417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21230.11e-160bZIP family protein