PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013637248.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C3H | ||||||||
Protein Properties | Length: 542aa MW: 60011.5 Da PI: 7.3497 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.9 | 3.6e-08 | 260 | 280 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd+C +aHg XP_013637248.1 260 PCPEFRK-GSCPKGDSCEYAHG 280 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.25.40.20 | 1.5E-14 | 32 | 179 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 2.18E-13 | 32 | 158 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 8.6E-4 | 76 | 106 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 15.061 | 76 | 184 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF13637 | 7.9E-8 | 77 | 129 | No hit | No description |
CDD | cd00204 | 9.51E-13 | 78 | 174 | No hit | No description |
SMART | SM00248 | 33 | 111 | 143 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 8.71 | 111 | 146 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 6.3E-5 | 255 | 281 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.976 | 255 | 282 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.9E-6 | 260 | 281 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-5 | 260 | 280 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.465 | 290 | 314 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 37 | 290 | 313 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 542 aa Download sequence Send to blast |
MCGSESNLCS SRTLTEAESM RQKSQEGVPA ATCLLELAAC DYLPSFRREI EENSSDINES 60 GFWYCRRVGS KKMGFQERTP LMVAAMYGSI DVLTYIISTG RSDVNSLSSD EKVTALHCAV 120 SACSVSIVQV IKILLDASAS PNSLDANGNK PVDLLVRASR FIPNQTRKAV EILLTGSSVS 180 LMEEQEEEEV KSVVSKYPAD ASLPDINEGV YGTDEFRMFS FKVKPCSRAY SHDWTECPFV 240 HPGENARRRD PRKYPYTCVP CPEFRKGSCP KGDSCEYAHG VFESWLHPGQ YRTRLCKDET 300 GCARRVCFFA HRRDELRPVN ASTGSAMVSP QSPMSSPMGD NGVPLSPRNV GLWQNTPPPL 360 QLNGSRLKSS LSARDMDMVM QLQSPSRHSQ MNHYPSSPVR QPPPQRFESS AAMAAAVMNA 420 RSSAFAKRSL SFKPAPVAAS NVSDWGSPNG KVEWGMQREE MNKMRRSVSF GINGNNNNNN 480 NVSRPVRDYS DEPDVSWVNS LVKDSAQEGA FGLNGAAVRD EFKLPLWAEQ MYIDHEKQQS 540 VA |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bol.9293 | 5e-95 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and anthers. {ECO:0000269|PubMed:17609218}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013637248.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353440 | 0.0 | AK353440.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-26-C17. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013637248.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 29-like | ||||
Swissprot | Q9XEE6 | 0.0 | C3H29_ARATH; Zinc finger CCCH domain-containing protein 29 | ||||
TrEMBL | A0A0D3BQB9 | 0.0 | A0A0D3BQB9_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g025470.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM877 | 26 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40140.2 | 0.0 | C3H family protein |