PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013637173.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ARF | ||||||||
Protein Properties | Length: 703aa MW: 77829.8 Da PI: 7.0142 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.5 | 1.5e-24 | 112 | 213 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ +++ + t++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF +++ XP_013637173.1 112 FAKTLTQSDANNGGGFSVPRYCAETIfprldytAEPPVQ--TVIAKDIHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLIAGDSIVFL--RSE 202 89****************************987555555..8************************************************..459 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++el+v+++r+ XP_013637173.1 203 TGELCVGIRRA 213 999******97 PP | |||||||
2 | Auxin_resp | 114.4 | 1e-37 | 280 | 363 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 a+ +a+ +++FevvY+Prast+eF+vk+++v++a++++++ GmRfkmafetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+ XP_013637173.1 280 AVARAACGQAFEVVYYPRASTPEFCVKASDVRSAMRIRWCSGMRFKMAFETEDSSRISWfMGTVSAVQVADPIRWPNSPWRLLQ 363 56778899**************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.8E-37 | 104 | 215 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.45E-29 | 105 | 213 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.96E-22 | 111 | 212 | No hit | No description |
Pfam | PF02362 | 2.9E-22 | 112 | 213 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.239 | 112 | 214 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.4E-22 | 112 | 214 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.9E-32 | 281 | 363 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 18.934 | 590 | 669 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0009743 | Biological Process | response to carbohydrate | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0031540 | Biological Process | regulation of anthocyanin biosynthetic process | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048441 | Biological Process | petal development | ||||
GO:0048442 | Biological Process | sepal development | ||||
GO:0048589 | Biological Process | developmental growth | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 703 aa Download sequence Send to blast |
MEQERSLDPQ LWQACAGSMV QIPSLNSTVF YFPQGHAEHA HAPPDFHAPR VPPLILCRVA 60 SVKFLADAET DEVYSKITLL PLPGNDLDLE NDAVLGLTPS PDVNGNEKPA SFAKTLTQSD 120 ANNGGGFSVP RYCAETIFPR LDYTAEPPVQ TVIAKDIHGE TWKFRHIYRG TPRRHLLTTG 180 WSTFVNQKKL IAGDSIVFLR SETGELCVGI RRAKRGGLGS NGLGSDNNNN SNNPYPGFSG 240 FLRDDEITTS KLMMMKRNGG NVNDANAPGG RVRVEAVAEA VARAACGQAF EVVYYPRAST 300 PEFCVKASDV RSAMRIRWCS GMRFKMAFET EDSSRISWFM GTVSAVQVAD PIRWPNSPWR 360 LLQVAWDEPD LLQNVKRVSP WLVELVSNMP AIHLSPFSPR KKLRIPQPFD FPFDGTKFPM 420 FSPGFAAGNN GGGESMCYLS NDNNNNAPAG IQGARQAQQL FGSPSPSLLS DLNLNTFHSG 480 SKLQQSSSSP AMFLSGFNPR HHYDNIVLPR QTRDAEFNNN ISCSLTIGNP GLAQDKKKSD 540 SVKTHQFLLF GQPILTEQQV MNRKRALEEE AEEEEKGGLT WNYGLQGLET GHCKVFMESE 600 DVGRTLDLSV IGSYQELYRK LAEMFGIEER SDLLTHVVYR DANGVTKRIG DEPFSDFMRA 660 TKRLTIKMDI SGDNVRKTWI TGIRNGENGI DSSTKTGQLS IFA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 4e-78 | 7 | 384 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013637173.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN979475 | 0.0 | JN979475.1 Brassica rapa subsp. pekinensis auxin response factor 10 (ARF10) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013637173.1 | 0.0 | PREDICTED: auxin response factor 10 | ||||
Refseq | XP_013692422.1 | 0.0 | auxin response factor 10 | ||||
Swissprot | Q9SKN5 | 0.0 | ARFJ_ARATH; Auxin response factor 10 | ||||
TrEMBL | A0A0D3BU67 | 0.0 | A0A0D3BU67_BRAOL; Auxin response factor | ||||
TrEMBL | J7GMM1 | 0.0 | J7GMM1_BRANA; Auxin response factor | ||||
STRING | Bo4g071620.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM580 | 27 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28350.1 | 0.0 | auxin response factor 10 |