PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013637170.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

FAR1

Protein Properties

Length: 795aa MW: 90331.5 Da PI: 6.7538

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013637170.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75.9	8.4e-24	59	145	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY+eYA++vGF +++++s++skr+g++++ + Cs+ g+++e++ + ++r+ +tgCka l++k+++d+kw++ ++++eHnHe++p XP_013637170.1 59 FYREYARSVGFGITIKASRRSKRSGKFIDVKIACSRFGTKRESTAA---IVNPRSCPKTGCKAGLHMKRKEDEKWVIVSFVKEHNHEISP 145 9*************************************999877...99**********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.1E-21	59	145	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.2E-21	229	321	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.878	506	542	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.7E-6	506	539	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.2E-6	517	544	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 795 aa Download sequence Send to blast
MDVEGVAIDL LSRNGANVDE PCEASTSGNA TSSTLENFAT VGEPINGMEF ESKEAAYYFY 60 REYARSVGFG ITIKASRRSK RSGKFIDVKI ACSRFGTKRE STAAIVNPRS CPKTGCKAGL 120 HMKRKEDEKW VIVSFVKEHN HEISPDDYYA SVRGKNKPPV GASAHQKKGL QLALEEDDFK 180 LMLERFAEMQ SKQPGFFYAV DFDSEKRIRN VFWLDVKAKQ DYYSFSDAVH FDTFYVRSGY 240 RVPFAPFVGV NHHRRYALLG CALIGEESES AYSWLFRTWR KAVGGGQAPG VMITDQDKVL 300 SDVVAEVFPT ARHCFSLWSV VSKVPEMVNP LDDGFTECFR DCVDGAWTDE QFERSWSEMV 360 GKFELNENEW LHSLFRDRKK WVPRYFHGLS FAGLSGPERS GSVVSHFDKY MNSEATFNEF 420 FELYTKFLQY RYDVEAKDDL DSQSKEPTLR SSLAFEKQLS LIYTDAAFKK FQTEVLGVVS 480 CQLQKEREDE TTAIFRVEDF EKRRNFFVSV KKEVLDVCCS CYLFEYQGFL CKHAMLVLQN 540 SDVSCVPSQY ILKRWSKKGN NREEKHEEGA AVDNRMSRFD DLCKRFVKLG EVASLSDEAY 600 KTALQFLGKN LKRCVRLNNS SKFPSEPGLE NEGTLDCASK LSRKKKTQKK RKAYNGPEDV 660 TNGSEELRQE PEQVSSRAPT FENCYIPQAA DMEATELGSR AAPLGMYYST QQTIGFSSVS 720 SVQDGYYYGH PATIQAMGNL HSVHGRMNQY ETQPSIQGAF QGQSAIRGCY DMEETLQDMF 780 HGSGPSHPGD HRLSH

Sequence ? help Back to Top

Protein Sequence Length: 795 aa Download sequence Send to blast

MDVEGVAIDL LSRNGANVDE PCEASTSGNA TSSTLENFAT VGEPINGMEF ESKEAAYYFY  60
REYARSVGFG ITIKASRRSK RSGKFIDVKI ACSRFGTKRE STAAIVNPRS CPKTGCKAGL  120
HMKRKEDEKW VIVSFVKEHN HEISPDDYYA SVRGKNKPPV GASAHQKKGL QLALEEDDFK  180
LMLERFAEMQ SKQPGFFYAV DFDSEKRIRN VFWLDVKAKQ DYYSFSDAVH FDTFYVRSGY  240
RVPFAPFVGV NHHRRYALLG CALIGEESES AYSWLFRTWR KAVGGGQAPG VMITDQDKVL  300
SDVVAEVFPT ARHCFSLWSV VSKVPEMVNP LDDGFTECFR DCVDGAWTDE QFERSWSEMV  360
GKFELNENEW LHSLFRDRKK WVPRYFHGLS FAGLSGPERS GSVVSHFDKY MNSEATFNEF  420
FELYTKFLQY RYDVEAKDDL DSQSKEPTLR SSLAFEKQLS LIYTDAAFKK FQTEVLGVVS  480
CQLQKEREDE TTAIFRVEDF EKRRNFFVSV KKEVLDVCCS CYLFEYQGFL CKHAMLVLQN  540
SDVSCVPSQY ILKRWSKKGN NREEKHEEGA AVDNRMSRFD DLCKRFVKLG EVASLSDEAY  600
KTALQFLGKN LKRCVRLNNS SKFPSEPGLE NEGTLDCASK LSRKKKTQKK RKAYNGPEDV  660
TNGSEELRQE PEQVSSRAPT FENCYIPQAA DMEATELGSR AAPLGMYYST QQTIGFSSVS  720
SVQDGYYYGH PATIQAMGNL HSVHGRMNQY ETQPSIQGAF QGQSAIRGCY DMEETLQDMF  780
HGSGPSHPGD HRLSH

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013637170.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013621581.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 2-like
Refseq	XP_013621583.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 2-like
Refseq	XP_013621584.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 2-like
Refseq	XP_013637168.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X1
Refseq	XP_013637169.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X1
Refseq	XP_013637170.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X1
Swissprot	Q3EBQ3	0.0	FRS2_ARATH; Protein FAR1-RELATED SEQUENCE 2
TrEMBL	A0A0D3BSR6	0.0	A0A0D3BSR6_BRAOL; Uncharacterized protein
STRING	Bo4g045820.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32250.3	0.0	FAR1-related sequence 2

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]