PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013636979.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 621aa    MW: 71851.5 Da    PI: 6.2368
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013636979.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS348.31.2e-1062426182373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfsh 95 
                     ++lL++cA+a+s+gd++ a  lL ++++ +sp+gd+ qRla++f++AL+arl++++  + ++  ++ ++ +++ s+ l+a++++   sP++++ +
  XP_013636979.1 242 RTLLTHCAQAISTGDKTTALDLLLQIRQDSSPQGDASQRLAHCFANALEARLQGTTGPVIQTYyNAITSLKETASDILKAYRVYLSSSPFVTLMY 336
                     689***************************************************6655555553888888888********************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +   ++Il+a++ +e +H++Df+i +G+QWp ++q ++ R++ p +lRiTg++ p+ g   +e++eetg+rL++++++++vpfe+++++++++e+
  XP_013636979.1 337 FFSFRMILDAAKDAEVLHVVDFGILYGFQWPMFIQYMSGRKDVPRKLRITGIELPQRGlrPAERIEETGRRLSEYCKRFNVPFEYKAIASQHWET 431
                     *********************************************************9*****************************9999**** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                     ++l+e++++pgE+laVn  l+l++l de++  e  +rd+vLkl+++++P+v+v++  + + n++ F  rf ea+++y alfd+++++lpr+++er
  XP_013636979.1 432 IRLDEFDIRPGEVLAVNAGLRLKTLQDETGGEETcPRDAVLKLIRKMNPDVFVHAIVNGSFNAPFFISRFKEAVYHYYALFDMFDSTLPRDNQER 526
                     ******************************999999*********************************************************** PP

            GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                     i  Ere+ gre++nv+ace+ +r+er et+++W+ r+ +aGFk+ p+++++++  +  l+k    + + v+e+s++l++gWk+r+ ++ S+W
  XP_013636979.1 527 IRFEREFYGREAMNVIACEEGDRVERPETYRQWQVRMVRAGFKQKPVRDEIVELFREKLKKWRyHKDFVVDENSKWLLQGWKGRTRYASSCW 618
                     ************************************************************9998999************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.919215598IPR005202Transcription factor GRAS
PfamPF035144.2E-104242618IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MDPNISLNGF EYLDESLFLD SSPSFDFDRN PSFLADPTEE PDENDSSTTL LRYVTQILME  60
ESVGDKQSMF YDSLALRKTE EMLQQVITDS KAHSFTTSDA SGSIGSSSSN LPVNEIVVKS  120
MFSDAESDLQ FRRGLEEARK FLPNSDQWVF NFERPVEVIK EEMGLRVKKS HEREFLDLEE  180
VRSSKQSATN VEDVEVTDMF DKVLLLDGQC DPQTLSENKH QQTKKKKKKK KSKKKSQVID  240
FRTLLTHCAQ AISTGDKTTA LDLLLQIRQD SSPQGDASQR LAHCFANALE ARLQGTTGPV  300
IQTYYNAITS LKETASDILK AYRVYLSSSP FVTLMYFFSF RMILDAAKDA EVLHVVDFGI  360
LYGFQWPMFI QYMSGRKDVP RKLRITGIEL PQRGLRPAER IEETGRRLSE YCKRFNVPFE  420
YKAIASQHWE TIRLDEFDIR PGEVLAVNAG LRLKTLQDET GGEETCPRDA VLKLIRKMNP  480
DVFVHAIVNG SFNAPFFISR FKEAVYHYYA LFDMFDSTLP RDNQERIRFE REFYGREAMN  540
VIACEEGDRV ERPETYRQWQ VRMVRAGFKQ KPVRDEIVEL FREKLKKWRY HKDFVVDENS  600
KWLLQGWKGR TRYASSCWVP A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-422456188374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224230KKKKKKK
2225233KKKKKKSKK
3225234KKKKKKSKKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013636979.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013636979.10.0PREDICTED: scarecrow-like protein 34
SwissprotP0C8840.0SCL34_ARATH; Scarecrow-like protein 34
TrEMBLA0A0D3BTY30.0A0A0D3BTY3_BRAOL; Uncharacterized protein
STRINGBo4g065830.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29065.10.0GRAS family protein