PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013636676.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TALE | ||||||||
Protein Properties | Length: 650aa MW: 72088.9 Da PI: 6.9974 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.3 | 1.4e-09 | 378 | 415 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + XP_013636676.1 378 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 415 554459******************************88 PP | |||||||
2 | BELL | 120.5 | 7.1e-39 | 241 | 312 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kkakL s+l+eV++rY+qy++q+q+vissFe++ag+gsak+YtslAlk+iSr+Fr+Lk+aia+qi XP_013636676.1 241 ERQEIQMKKAKLSSMLHEVEQRYRQYHQQMQMVISSFEQAAGIGSAKSYTSLALKTISRQFRSLKEAIAGQI 312 79*********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 2.4E-66 | 169 | 310 | IPR006563 | POX domain |
Pfam | PF07526 | 6.5E-45 | 175 | 309 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.26 | 356 | 419 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.3E-9 | 359 | 423 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.30E-12 | 359 | 420 | No hit | No description |
SuperFamily | SSF46689 | 5.56E-17 | 360 | 426 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.1E-29 | 362 | 425 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.6E-18 | 376 | 415 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 650 aa Download sequence Send to blast |
MAAYFHGNPP EISAGSDGSL QTLILMNPTT YVQYTQQDDD SNNNNNNSNN TNNNNSFVFL 60 NSHAPPQNAS QQFIGIPLSG HEAASITSAD SISVLQGYPP RVKYSHYSSH QVDSSHQQAA 120 CETPRAHQGL FLTLSSQQQQ QQHQNQHQTF HHVGLGPGPG QNMRVGSGST GIATLVSSKY 180 LEAAQELLDE VVKADSNDIN TRSQLFSSKK GTNETDNKAV GESSGGGEAS EKNKVELGTV 240 ERQEIQMKKA KLSSMLHEVE QRYRQYHQQM QMVISSFEQA AGIGSAKSYT SLALKTISRQ 300 FRSLKEAIAG QIKAANNSLG EEDSVSGVGR LKFVDHQLRQ QRALQQLGMI QHHPSNNAWR 360 PQRGLPERAV SVLRAWLFEH FLHPYPKDSD KHMLAKQTGL TRSQVSNWFI NARVRLWKPM 420 VEEMYVEEMK EQGKNMGSME KTPNLDQNNE DSASKSASNQ EKSPMGGRGV DNYHLNPNQN 480 GELEGVTGMQ GSPKRLRTNE ETMMQPNVDF TSNEKLTMKI LEERQEIRSD GGYPFMGNFG 540 QYQMDEMSRF DVAVSDQELL AQRYSGNNNG VSLTLGLPHC DSLSSTRHQG FMQTHHGIPI 600 GRRVKIGETE EYGAANISAA TVHSSAAAYS AMNIQNQKRY VAQLLPDFVA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 2e-16 | 365 | 423 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 2e-16 | 365 | 423 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013636676.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189380 | 0.0 | AC189380.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB050K06, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013636675.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 isoform X2 | ||||
Refseq | XP_013636676.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 isoform X2 | ||||
Refseq | XP_013636677.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 isoform X2 | ||||
Swissprot | Q9SJ56 | 0.0 | BLH1_ARATH; BEL1-like homeodomain protein 1 | ||||
TrEMBL | A0A0D3BRP7 | 0.0 | A0A0D3BRP7_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6CES5 | 0.0 | A0A3P6CES5_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g036190.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 0.0 | BEL1-like homeodomain 1 |
Publications ? help Back to Top | |||
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