PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013636676.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 650aa    MW: 72088.9 Da    PI: 6.9974
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013636676.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.31.4e-093784151954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  XP_013636676.1 378 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 415
                     554459******************************88 PP

2BELL120.57.1e-39241312172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     erqe+q+kkakL s+l+eV++rY+qy++q+q+vissFe++ag+gsak+YtslAlk+iSr+Fr+Lk+aia+qi
  XP_013636676.1 241 ERQEIQMKKAKLSSMLHEVEQRYRQYHQQMQMVISSFEQAAGIGSAKSYTSLALKTISRQFRSLKEAIAGQI 312
                     79*********************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.4E-66169310IPR006563POX domain
PfamPF075266.5E-45175309IPR006563POX domain
PROSITE profilePS5007112.26356419IPR001356Homeobox domain
SMARTSM003892.3E-9359423IPR001356Homeobox domain
CDDcd000862.30E-12359420No hitNo description
SuperFamilySSF466895.56E-17360426IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.1E-29362425IPR009057Homeodomain-like
PfamPF059202.6E-18376415IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MAAYFHGNPP EISAGSDGSL QTLILMNPTT YVQYTQQDDD SNNNNNNSNN TNNNNSFVFL  60
NSHAPPQNAS QQFIGIPLSG HEAASITSAD SISVLQGYPP RVKYSHYSSH QVDSSHQQAA  120
CETPRAHQGL FLTLSSQQQQ QQHQNQHQTF HHVGLGPGPG QNMRVGSGST GIATLVSSKY  180
LEAAQELLDE VVKADSNDIN TRSQLFSSKK GTNETDNKAV GESSGGGEAS EKNKVELGTV  240
ERQEIQMKKA KLSSMLHEVE QRYRQYHQQM QMVISSFEQA AGIGSAKSYT SLALKTISRQ  300
FRSLKEAIAG QIKAANNSLG EEDSVSGVGR LKFVDHQLRQ QRALQQLGMI QHHPSNNAWR  360
PQRGLPERAV SVLRAWLFEH FLHPYPKDSD KHMLAKQTGL TRSQVSNWFI NARVRLWKPM  420
VEEMYVEEMK EQGKNMGSME KTPNLDQNNE DSASKSASNQ EKSPMGGRGV DNYHLNPNQN  480
GELEGVTGMQ GSPKRLRTNE ETMMQPNVDF TSNEKLTMKI LEERQEIRSD GGYPFMGNFG  540
QYQMDEMSRF DVAVSDQELL AQRYSGNNNG VSLTLGLPHC DSLSSTRHQG FMQTHHGIPI  600
GRRVKIGETE EYGAANISAA TVHSSAAAYS AMNIQNQKRY VAQLLPDFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-16365423563Homeobox protein Meis2
3k2a_B2e-16365423563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013636676.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893800.0AC189380.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB050K06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013636675.10.0PREDICTED: BEL1-like homeodomain protein 1 isoform X2
RefseqXP_013636676.10.0PREDICTED: BEL1-like homeodomain protein 1 isoform X2
RefseqXP_013636677.10.0PREDICTED: BEL1-like homeodomain protein 1 isoform X2
SwissprotQ9SJ560.0BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A0D3BRP70.0A0A0D3BRP7_BRAOL; Uncharacterized protein
TrEMBLA0A3P6CES50.0A0A3P6CES5_BRAOL; Uncharacterized protein
STRINGBo4g036190.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.30.0BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]