PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013636652.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 698aa MW: 76944.9 Da PI: 6.3787

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013636652.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.1	0.00038	535	583	13	40
HHHHHHHHHHHHCTSCCC........................TTS-STC CS HLH 13 RdriNsafeeLrellPkas.....................kapskKlsK 40 R+ i +++ eLrel+P+ s ++ KlsK XP_013636652.1 535 RQLIQDRIKELRELVPNGSkcsidsllertikhmlflqnvTKHADKLSK 583 67799************53355555555555555555555555555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	1.4E-29	6	162	IPR025610	Transcription factor MYC/MYB N-terminal
CDD	cd00083	9.63E-4	517	573	No hit	No description
PROSITE profile	PS50888	11.28	522	571	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.9E-4	535	584	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.88E-5	535	577	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 698 aa Download sequence Send to blast
MGSTSQEILR SLCSNTEWRY AVFWKLNHRS RMVLTLEDAY YDNHGHNNSP GVQGCGVIPK 60 DMHGAHDSLG LAVAKMAYHV YSLGEGIVGH VALSGGHQWV FPENYGNCHS AAEFHNVWES 120 QISAGVKTIL VVAVGPCGVV QLGSLLKVDE DVTLVNHIRH MFLALKDPMA DHAASLMQCN 180 MNNSLSLPKI PSECLHVEAN PYCSGEVGKA MDVEELTQYK LRRSDSMPYN TPSCLLMEKA 240 AQVVQGSSCG SYSSVTFGFP IDLIDAKHEN QVRSGCKDPR VLDPNLHQYM KNYVLNNTSS 300 SALATEAERL ISGQSYLGLD STFYDSSRTG KESSYQNEVF QLSENQGNRY REETERMLEG 360 KCEDALISSG YPFAGSELLE ALGSGFKQTS RGGPEELVKS EHGSTTRPTD DTSHSQLTFD 420 PGPGPENLLD AVVANVCHSD GNARDDILSS RSVHSLLTSM AEPSGQKMHN QLPLAEVYTQ 480 QNPSDICGAF SSIGFSSTCP SSSSDQFQTS LEMMPKKIKK RAKPGESSRP RPRDRQLIQD 540 RIKELRELVP NGSKCSIDSL LERTIKHMLF LQNVTKHADK LSKSATTKMQ QKETGTQGST 600 CAVEVGGHLQ VCSIIVENLN KQGMVLIEML CEECSHFLEI ANVIRSLDLI ILRGVTEAQG 660 EKTWICFVVE SQNNKVMQRM DILWSLVQIF QPKANGKH

Sequence ? help Back to Top

Protein Sequence Length: 698 aa Download sequence Send to blast

MGSTSQEILR SLCSNTEWRY AVFWKLNHRS RMVLTLEDAY YDNHGHNNSP GVQGCGVIPK  60
DMHGAHDSLG LAVAKMAYHV YSLGEGIVGH VALSGGHQWV FPENYGNCHS AAEFHNVWES  120
QISAGVKTIL VVAVGPCGVV QLGSLLKVDE DVTLVNHIRH MFLALKDPMA DHAASLMQCN  180
MNNSLSLPKI PSECLHVEAN PYCSGEVGKA MDVEELTQYK LRRSDSMPYN TPSCLLMEKA  240
AQVVQGSSCG SYSSVTFGFP IDLIDAKHEN QVRSGCKDPR VLDPNLHQYM KNYVLNNTSS  300
SALATEAERL ISGQSYLGLD STFYDSSRTG KESSYQNEVF QLSENQGNRY REETERMLEG  360
KCEDALISSG YPFAGSELLE ALGSGFKQTS RGGPEELVKS EHGSTTRPTD DTSHSQLTFD  420
PGPGPENLLD AVVANVCHSD GNARDDILSS RSVHSLLTSM AEPSGQKMHN QLPLAEVYTQ  480
QNPSDICGAF SSIGFSSTCP SSSSDQFQTS LEMMPKKIKK RAKPGESSRP RPRDRQLIQD  540
RIKELRELVP NGSKCSIDSL LERTIKHMLF LQNVTKHADK LSKSATTKMQ QKETGTQGST  600
CAVEVGGHLQ VCSIIVENLN KQGMVLIEML CEECSHFLEI ANVIRSLDLI ILRGVTEAQG  660
EKTWICFVVE SQNNKVMQRM DILWSLVQIF QPKANGKH

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may regulate root development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013636652.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352985	0.0	AK352985.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-15-P09.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013636652.1	0.0	PREDICTED: transcription factor bHLH155-like
Swissprot	Q58G01	0.0	LHWL3_ARATH; Transcription factor bHLH155
TrEMBL	A0A0D3C3E3	0.0	A0A0D3C3E3_BRAOL; Uncharacterized protein
STRING	Bo4g176150.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2083	20	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	0.0	conserved peptide upstream open reading frame 7

Publications ? help Back to Top
Ohashi-Ito K,Matsukawa M,Fukuda H An atypical bHLH transcription factor regulates early xylem development downstream of auxin. Plant Cell Physiol., 2013. 54(3): p. 398-405 [PMID:23359424]