PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013636619.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 288aa    MW: 31665.4 Da    PI: 8.3003
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013636619.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.21.2e-17160214256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++k++  +Lee F+++++++ +++  LAk+l+L +rqV vWFqNrRa+ k
  XP_013636619.1 160 RKKLRLSKDEALVLEETFKEHSTLNPKQKLALAKQLNLRTRQVEVWFQNRRARTK 214
                     778899***********************************************98 PP
2HD-ZIP_I/II119.22.2e-38160249191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rlsk+ + +LEe+F+e+++L+p++K +la++L+l++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++d+l+een+rL+kev+ Lr +l
  XP_013636619.1 160 RKKLRLSKDEALVLEETFKEHSTLNPKQKLALAKQLNLRTRQVEVWFQNRRARTKLKQTEVDCEYLKRCCDNLTEENRRLQKEVSGLR-AL 249
                     69***********************************************************************************999.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046188.7E-321120IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.602.0E-18141214IPR009057Homeodomain-like
SuperFamilySSF466891.41E-17142217IPR009057Homeodomain-like
PROSITE profilePS5007116.876156216IPR001356Homeobox domain
SMARTSM003893.5E-14158220IPR001356Homeobox domain
PfamPF000463.8E-15160214IPR001356Homeobox domain
CDDcd000865.62E-14160217No hitNo description
PROSITE patternPS000270191214IPR017970Homeobox, conserved site
SMARTSM003402.1E-25216259IPR003106Leucine zipper, homeobox-associated
PfamPF021831.2E-11216250IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009641Biological Processshade avoidance
GO:0009725Biological Processresponse to hormone
GO:0010218Biological Processresponse to far red light
GO:0005634Cellular Componentnucleus
GO:0009506Cellular Componentplasmodesma
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MGERDDGLAL SLSLGFSQLK EPSLRLNLMP STTSSFPHMQ NHKNNHLPQK THHSSWPHLF  60
QSSGTTRITA ERNSNLGSFL RGFDVNRPPS VAVVVELDEE TAGMSSPNSN VSSVSGNKRD  120
LAAAARGEGD ETEGERASCS HGGGSCGSDD EDGANRDGSR KKLRLSKDEA LVLEETFKEH  180
STLNPKQKLA LAKQLNLRTR QVEVWFQNRR ARTKLKQTEV DCEYLKRCCD NLTEENRRLQ  240
KEVSGLRALK LSPNLYMQMT PTTLTMCPSC ERVSASSSAV AAPPPPSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158164SRKKLRL
2208216RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013636619.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By transition from light to far-red light. {ECO:0000269|PubMed:8106086}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013636619.10.0PREDICTED: homeobox-leucine zipper protein ATHB-4-like
SwissprotP929531e-140ATHB4_ARATH; Homeobox-leucine zipper protein ATHB-4
TrEMBLA0A0D3BPY70.0A0A0D3BPY7_BRAOL; Uncharacterized protein
STRINGBo4g024150.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25772772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44910.11e-116homeobox-leucine zipper protein 4
Publications ? help Back to Top
  1. Carabelli M,Turchi L,Ruzza V,Morelli G,Ruberti I
    Homeodomain-Leucine Zipper II family of transcription factors to the limelight: central regulators of plant development.
    Plant Signal Behav, 2014.
    [PMID:23838958]
  2. Francisco M, et al.
    Genome Wide Association Mapping in Arabidopsis thaliana Identifies Novel Genes Involved in Linking Allyl Glucosinolate to Altered Biomass and Defense.
    Front Plant Sci, 2016. 7: p. 1010
    [PMID:27462337]
  3. Gallemí M, et al.
    A non-DNA-binding activity for the ATHB4 transcription factor in the control of vegetation proximity.
    New Phytol., 2017. 216(3): p. 798-813
    [PMID:28805249]