PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013636558.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TALE | ||||||||
Protein Properties | Length: 648aa MW: 71451.9 Da PI: 7.0584 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.8 | 1e-09 | 456 | 493 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe n+yps +++ LA+++gL+ +qV++WF N R + XP_013636558.1 456 FEHflNPYPSDADKHLLARQTGLSRNQVSNWFINARVR 493 665569******************************88 PP | |||||||
2 | BELL | 123.6 | 7.7e-40 | 314 | 385 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r e+q++k+kLls+leeVd+rY++y+eq+q+v++sF++v+g+g+a pYt+lA+ka+SrhFrcLkda+a q+ XP_013636558.1 314 DRIEHQRRKVKLLSMLEEVDRRYNHYCEQMQMVVNSFDQVMGYGAAVPYTTLAQKAMSRHFRCLKDAVAVQL 385 589******************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 7.6E-82 | 238 | 383 | IPR006563 | POX domain |
Pfam | PF07526 | 1.0E-51 | 244 | 382 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.86 | 434 | 497 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.80E-12 | 437 | 498 | No hit | No description |
SMART | SM00389 | 1.1E-9 | 437 | 501 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.33E-17 | 438 | 504 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-28 | 440 | 503 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.9E-18 | 454 | 493 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 648 aa Download sequence Send to blast |
MGLATTTVPH HHHKKTLDNS LDSMSQDYHH HQGIFSFSSG FHRPSSSHQE EVEESAVSGA 60 QIPVYETAGM LSEMFSYPGG GNGGSGEIPD HSTKQLLEQQ NRHNNNNSTL HMLLPNHHHH 120 QGYGYPNEQQ FTWPSSSDHH QSQGDMIGTV HVEGGKGLSL SLSSSLEAAA AAAKAEEYRS 180 IYCAAVDGTS SSSNASVHHH QFNQLKTLLL DNSSSHQHQV MGHFGSSSSS PMAASSSIGG 240 IYTLRNSKYT KPAQELLEEF CSVGRGHNFK KNKLSRNNSN PNTSGCGGGG GGGGGGSSSS 300 AGAANDNPPL SPADRIEHQR RKVKLLSMLE EVDRRYNHYC EQMQMVVNSF DQVMGYGAAV 360 PYTTLAQKAM SRHFRCLKDA VAVQLKRSCE LLGDKESAGA ASSGLTKGET PRLRLLEQSL 420 RQQRAFHHMG MMEQEAWRPQ RGLPERSVNI LRAWLFEHFL NPYPSDADKH LLARQTGLSR 480 NQVSNWFINA RVRLWKPMVE EMYQQEAKER EEEELGENKK EDYQHQRRHQ QTNNKDTKPN 540 ESNFTLVQTI TAQTPTTTMM TSTPHENDPS FLPPSTSVAT APSLGVSGAF TVSTCQQDVS 600 DFHVEDGVIR FGTKQAGDVS LTLGLRHTGN MPDNNKNPSF SVRDFGDF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrm_A | 8e-16 | 443 | 501 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 8e-16 | 443 | 501 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 6e-16 | 443 | 500 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 6e-16 | 443 | 500 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 283 | 296 | SGCGGGGGGGGGGS |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in lateral organs. {ECO:0000269|PubMed:17873098}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269|PubMed:17873098}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013636558.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352811 | 0.0 | AK352811.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-J15. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013636558.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 4 | ||||
Refseq | XP_022571116.1 | 0.0 | BEL1-like homeodomain protein 4 | ||||
Swissprot | Q94KL5 | 0.0 | BLH4_ARATH; BEL1-like homeodomain protein 4 | ||||
TrEMBL | A0A078JCR1 | 0.0 | A0A078JCR1_BRANA; BnaC04g56300D protein | ||||
TrEMBL | A0A0D3C1J6 | 0.0 | A0A0D3C1J6_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6CR34 | 0.0 | A0A3P6CR34_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g151860.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2166 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23760.3 | 0.0 | BEL1-like homeodomain 4 |
Publications ? help Back to Top | |||
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