PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013636485.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 234aa MW: 26950.4 Da PI: 7.4497

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013636485.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.6	6.7e-34	23	77	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av++LGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl XP_013636485.1 23 KPRLRWTAELHERFVDAVTHLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 77 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.2E-32	20	78	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.53	20	80	IPR017930	Myb domain
SuperFamily	SSF46689	4.48E-17	22	78	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-24	23	78	IPR006447	Myb domain, plants
Pfam	PF00249	5.7E-8	25	75	IPR001005	SANT/Myb domain
Pfam	PF14379	3.4E-12	123	162	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MMQSREERRS ESPSGLVLTT DPKPRLRWTA ELHERFVDAV THLGGPDKAT PKTIMRVMGV 60 KGLTLYHLKS HLQKFRLGKQ PHKDHSHGHS TNIRDPNRVS MFDLQRNVVF TTPHITGHNM 120 NEMQTEVHRR IEEEVELERQ VNQRIEAQGK YMESMLEKAC ETQEASLTKD YSTLFFDRTT 180 ICNNSSPLTI QWFEDQFPSS SSMDSAMHLP DINSNFSLQD SRSSITKNHT VCLG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-19	23	79	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-19	23	79	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-19	23	79	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-19	23	79	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-19	23	79	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-19	23	79	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-19	23	79	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-19	23	79	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in phloem and/or cambium. {ECO:0000269\|PubMed:15923329}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00351	DAP	Transfer from AT3G12730	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013636485.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013636485.1	1e-177	PREDICTED: myb family transcription factor APL-like
Swissprot	Q8VYI2	1e-145	PHLC_ARATH; Myb family transcription factor PHL12
TrEMBL	A0A0D3AE62	1e-176	A0A0D3AE62_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6F552	1e-176	A0A3P6F552_BRAOL; Uncharacterized protein
STRING	Bo1g138980.1	1e-176	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13745	17	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12730.1	1e-142	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]