PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013636375.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 286aa MW: 32796.1 Da PI: 8.1185 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.6 | 2.6e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv ++k +G g+W++ +r g+ R++k+c++rw +yl XP_013636375.1 14 KGAWTKEEDDKLVSYIKSHGEGCWRSLPRSAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 54.2 | 3.2e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T eEd+ +++++ +lG++ W++Ia +++ gRt++++k++w+++ XP_013636375.1 67 RGNFTLEEDDVIIKLHSLLGNK-WSLIATRLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.401 | 9 | 61 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.87E-29 | 13 | 108 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.4E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.60E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 27.769 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-27 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.81E-10 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MGRSPCCEKD HTNKGAWTKE EDDKLVSYIK SHGEGCWRSL PRSAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TLEEDDVIIK LHSLLGNKWS LIATRLPGRT DNEIKNYWNT HVKRKLLRGG 120 IDPTTHRPIN EAKAPCDSSE TRETEDSLVK FLSFSRQLEK KESFGEERND QKGLICKKER 180 VEYSIVEEKC LDLNLELRIS PPWQDQQHHD ETKLWFGREK YMCTACRFGL GNGKKCSCDN 240 VKCQVEYSSS SSSHSSSDIS SSVIGYDFLG LKLNTSVLDF STSEMN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-28 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in roots, and, to a lower extent, in stems, flower buds, and siliques. {ECO:0000269|PubMed:9839469}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013636375.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light, UV, cold, drought, ethylene, jasmonic acid (JA), salicylic acid (SA), abscisic acid (ABA), cadmium (CdCl(2)), high salt (NaCl), and cytokinins. {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF738281 | 1e-141 | KF738281.1 Brassica napus MYB transcription factor 32-1 (MYB32-1.1) mRNA, complete cds. | |||
GenBank | KF738282 | 1e-141 | KF738282.1 Brassica napus MYB transcription factor 32-2 (MYB32-2.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013636375.1 | 0.0 | PREDICTED: transcription factor MYB32-like | ||||
Swissprot | O49608 | 1e-151 | MYB32_ARATH; Transcription factor MYB32 | ||||
TrEMBL | A0A0D3A1V6 | 0.0 | A0A0D3A1V6_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g006820.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34990.1 | 1e-151 | myb domain protein 32 |