PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013636347.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 368aa MW: 41260.7 Da PI: 6.6368

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013636347.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.9	1.4e-10	180	238	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l l+ l+ e+ XP_013636347.1 180 KRAKRIWANRQSAARSKERKTRYIFELERKVQTLQTEATTLSAQLTLLQRDTNGLTVEN 238 9********************************************99998887777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.2E-15	176	240	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.565	178	241	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.1E-8	178	234	No hit	No description
SuperFamily	SSF57959	1.83E-10	180	231	No hit	No description
Pfam	PF00170	6.1E-9	180	232	IPR004827	Basic-leucine zipper domain
CDD	cd14703	1.47E-20	181	230	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
MEREKSPAPS GGLPPPSPTP IGHDMSRMLE HPPKKIGHRR AHSEILTLPD DLSFDSDLGV 60 VGTNAADGAS FSDDTEEELL SMYLDMDKFN SSTATSSAAA QVGEPSWRNE SVGMHTGSTS 120 NPQNSFGERP RVRHQHSHSM DGSLNISEML VSGEGDDSVV DAKKSMSAAK LAELALIDPK 180 RAKRIWANRQ SAARSKERKT RYIFELERKV QTLQTEATTL SAQLTLLQRD TNGLTVENNE 240 LKLRLQTMEQ QVHLQDELNE ALKEEIQHLK VLTGQAASNG ASSGMNYGSF GQQQQQFYSN 300 NQSMQTILAA QQLQQLQLHS QKQQQHQHQQ QQQFQFQQQQ IQQLMQHRLR QQEQQNGKQK 360 PFNGQNES

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

MEREKSPAPS GGLPPPSPTP IGHDMSRMLE HPPKKIGHRR AHSEILTLPD DLSFDSDLGV  60
VGTNAADGAS FSDDTEEELL SMYLDMDKFN SSTATSSAAA QVGEPSWRNE SVGMHTGSTS  120
NPQNSFGERP RVRHQHSHSM DGSLNISEML VSGEGDDSVV DAKKSMSAAK LAELALIDPK  180
RAKRIWANRQ SAARSKERKT RYIFELERKV QTLQTEATTL SAQLTLLQRD TNGLTVENNE  240
LKLRLQTMEQ QVHLQDELNE ALKEEIQHLK VLTGQAASNG ASSGMNYGSF GQQQQQFYSN  300
NQSMQTILAA QQLQQLQLHS QKQQQHQHQQ QQQFQFQQQQ IQQLMQHRLR QQEQQNGKQK  360
PFNGQNES

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bol.2857	2e-41	leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed constitutively at a low level in young seedlings and in roots, stems and leaves of mature plants.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013636347.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353283	0.0	AK353283.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-24-D07.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013636347.1	0.0	PREDICTED: probable transcription factor PosF21
Swissprot	Q04088	0.0	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	A0A078IXG1	0.0	A0A078IXG1_BRANA; BnaCnng30720D protein
TrEMBL	A0A0D3BT54	0.0	A0A0D3BT54_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6BZH9	0.0	A0A3P6BZH9_BRAOL; Uncharacterized protein
STRING	Bo4g052150.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2445	27	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31370.5	1e-139	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]