PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013636306.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 258aa    MW: 29410.4 Da    PI: 8.033
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013636306.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind254.7e-081554443
                    HHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHH CS
    HSF_DNA-bind  4 kklyeiledeelkeliswsengnsfvvldeeefakkvLpk 43
                    ++lye ++d++  +++ wse+g+sf+v de ef k vLp+
  XP_013636306.1 15 SRLYETVNDPSKASIVAWSESGKSFIVGDEVEFRKAVLPR 54
                    689***********************************97 PP
2HSF_DNA-bind46.31.2e-14139220289
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHH..HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpk..yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                     F++ +y++++d+++++++swse+g+sf+v++e++f ++vLp+   F  + ++S++  L+  g++kv+++e+        we++ +++ +g
  XP_013636306.1 139 FIRGVYDMVDDPSTDSVVSWSESGKSFIVWNESKFLRDVLPSrlPFDYKDMTSLTTWLHAIGYSKVEESEH--------WEYTADYLVRG 220
                     9999************************************99667*********************99984........66666665555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.3E-4994IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.107.9E-81154IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.0E-81383IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004479.0E-61554IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.8E-18132222IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-12135222IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.03E-15136222IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.0E-13139222IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDCDSNRGLI AYYRSRLYET VNDPSKASIV AWSESGKSFI VGDEVEFRKA VLPRECLVHL  60
GFSQSHEQCE YACPYFMRGQ PDLKPSSQDK LIRKIETNNK GLNDGRIRFS SLSCYKEICR  120
LAKKERPPSS SIRRPPPLFI RGVYDMVDDP STDSVVSWSE SGKSFIVWNE SKFLRDVLPS  180
RLPFDYKDMT SLTTWLHAIG YSKVEESEHW EYTADYLVRG QPLPPKDTSP CTPGGLMITP  240
EFARIIERSF ASPKAGKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013636306.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895960.0AC189596.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH014A02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013636306.10.0PREDICTED: uncharacterized protein LOC106342060
RefseqXP_013636307.10.0PREDICTED: uncharacterized protein LOC106342060
RefseqXP_013636308.10.0PREDICTED: uncharacterized protein LOC106342060
RefseqXP_013636309.10.0PREDICTED: uncharacterized protein LOC106342060
RefseqXP_013636310.10.0PREDICTED: uncharacterized protein LOC106342060
TrEMBLA0A0D3C5F40.0A0A0D3C5F4_BRAOL; Uncharacterized protein
STRINGBo4g190190.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132311127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18870.11e-27HSF family protein