PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013636296.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 378aa    MW: 42931.3 Da    PI: 9.8691
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013636296.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.12.4e-16695198
                    EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                    ffk l     + s+ l +p  f+++h +g +e + t +l++ +s  +W+vk+      ++  lt+GWkeF+ a++L++gD+vvF+ ++++ f  +v+
  XP_013636296.1  6 FFKPL--LPGFHSH-LKIPVAFFSKHiEGRNEHKNTAKLRSdTSEITWKVKI-----EDGLKLTEGWKEFALAHDLRVGDIVVFRQENDMAF--HVT 92
                    66666..5667777.9***********556667779999997888*******.....56678***********************6666777..998 PP

                    EE- CS
              B3 96 vfr 98
                    +f 
  XP_013636296.1 93 LFG 95
                    875 PP
2B375.18.3e-24144229693
                     ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                     +++++l+ ++l +pk+fa+++g+++ +s +++l++e+g sW++ l+ +++ g++++t+GW++F+ angLk+g f++Fkl++r +++lv
  XP_013636296.1 144 VTPSSLRYDMLNIPKSFARANGIES-RSGEIVLMNEKGTSWTLILKRKNSCGTMYITRGWRRFCGANGLKAGCFFTFKLIQR-GGTLV 229
                     7899999**************8775.666****************98888888***************************95.44444 PP
3B364.12.2e-20276372199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f++ +++++  +++ l+lp +f+++h++++  +++++l d++g +W+  l+ +k+s+++ l +GWkeF kan ++ g++++ kl+++ ++++v+k
  XP_013636296.1 276 FVTLTLKPYEVEKSTLYLPVQFTRRHSINE--ETKMRLLDKNGVKWSTDLRSEKRSDKIRLVGGWKEFFKANCVEMGESIIVKLIWDGDTSCVLK 368
                     667778899999999***********9995..458*******************************************************9**** PP

                     EE-S CS
              B3  96 vfrk 99 
                     +++k
  XP_013636296.1 369 FCSK 372
                     *987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.548397IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.5E-233109IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-203104IPR015300DNA-binding pseudobarrel domain
CDDcd100171.98E-16594No hitNo description
SMARTSM010194.1E-22697IPR003340B3 DNA binding domain
PfamPF023622.2E-111494IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-23132229IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.63E-22138233IPR015300DNA-binding pseudobarrel domain
CDDcd100171.80E-23139231No hitNo description
PROSITE profilePS5086315.735139236IPR003340B3 DNA binding domain
SMARTSM010193.6E-31140236IPR003340B3 DNA binding domain
PfamPF023621.6E-22143230IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-19268372IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-19273365IPR015300DNA-binding pseudobarrel domain
CDDcd100178.84E-16275370No hitNo description
PfamPF023624.8E-19276372IPR003340B3 DNA binding domain
PROSITE profilePS5086313.606276373IPR003340B3 DNA binding domain
SMARTSM010194.0E-24276373IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MANQHFFKPL LPGFHSHLKI PVAFFSKHIE GRNEHKNTAK LRSDTSEITW KVKIEDGLKL  60
TEGWKEFALA HDLRVGDIVV FRQENDMAFH VTLFGPSCCE IQYGSCLDDK NKLVAIQSSK  120
KKMKNTKREA ESSTLEPSCY VANVTPSSLR YDMLNIPKSF ARANGIESRS GEIVLMNEKG  180
TSWTLILKRK NSCGTMYITR GWRRFCGANG LKAGCFFTFK LIQRGGTLVL HKSPSSTESE  240
DSSEGDEIAP LSTESKSFKK TSSIWKASSS SFQNLFVTLT LKPYEVEKST LYLPVQFTRR  300
HSINEETKMR LLDKNGVKWS TDLRSEKRSD KIRLVGGWKE FFKANCVEMG ESIIVKLIWD  360
GDTSCVLKFC SKVKQETR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013636296.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013636296.10.0PREDICTED: B3 domain-containing protein REM14-like
SwissprotO230761e-116REM15_ARATH; Putative B3 domain-containing protein REM15
TrEMBLA0A0D3C1U50.0A0A0D3C1U5_BRAOL; Uncharacterized protein
TrEMBLA0A3P6D0G80.0A0A3P6D0G8_BRAOL; Uncharacterized protein
STRINGBo4g154830.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.11e-114B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]