PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013636130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | CO-like | ||||||||
Protein Properties | Length: 334aa MW: 37929 Da PI: 6.2699 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 17.4 | 9.1e-06 | 13 | 43 | 4 | 34 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeH 34 r+C+ +e+ + +C+ ++ lC C + H XP_013636130.1 13 RICDYCESSVALVYCKADSAKLCLACDNQVH 43 79**************************999 PP | |||||||
2 | zf-B_box | 23 | 1.7e-07 | 56 | 98 | 4 | 42 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg....Htvvpl 42 C+ +++ + + fC + ++ lC++C ++H + H+++pl XP_013636130.1 56 LLCDSCDDSPSSVFCDTESSVLCQNCDWQHHTSssslHSRRPL 98 57***************************88668899988775 PP | |||||||
3 | CCT | 58.4 | 2.5e-20 | 290 | 332 | 1 | 43 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 R+ al+RYk K+k+R++eK+irYesRK++AesR R++GrF+k+ XP_013636130.1 290 RNSALSRYKAKKKSRRYEKHIRYESRKVRAESRTRIRGRFAKS 332 899**************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.783 | 10 | 57 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.0E-11 | 10 | 57 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.88E-6 | 13 | 57 | No hit | No description |
PROSITE profile | PS50119 | 10.395 | 53 | 98 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.71E-4 | 57 | 84 | No hit | No description |
SMART | SM00336 | 0.31 | 58 | 98 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 2.2E-14 | 290 | 332 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 14.406 | 290 | 332 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 334 aa Download sequence Send to blast |
MEKEEEEEGS HHRICDYCES SVALVYCKAD SAKLCLACDN QVHVTNQLFS KHFRSLLCDS 60 CDDSPSSVFC DTESSVLCQN CDWQHHTSSS SLHSRRPLEG FSGCPSVTEL LALVGLDDLS 120 DKALFLPHPR GGSEQTPPQI VSLNDLVASD GSSHNYRAMD VPPLPKNRHA TCGRHKEEMI 180 RQLRELSRSE PSCLKYETLD AELDTTGFLF LEPGNDDYLF SSTFESQVGG LKWFEDQQED 240 YYPYSDDNNV NQRGCSTQQQ QQQESSPVMV PVSTSTTTTR LTHEINSLER NSALSRYKAK 300 KKSRRYEKHI RYESRKVRAE SRTRIRGRFA KSHP |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013636130.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC189634 | 0.0 | AC189634.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS004I08, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013636130.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 13 | ||||
Swissprot | O82256 | 1e-147 | COL13_ARATH; Zinc finger protein CONSTANS-LIKE 13 | ||||
TrEMBL | A0A078ITC7 | 0.0 | A0A078ITC7_BRANA; BnaC04g00040D protein | ||||
TrEMBL | A0A0D3BNH9 | 0.0 | A0A0D3BNH9_BRAOL; Uncharacterized protein (Fragment) | ||||
STRING | Bo4g002240.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8148 | 27 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G47890.1 | 1e-108 | B-box type zinc finger protein with CCT domain |
Publications ? help Back to Top | |||
---|---|---|---|
|