PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013636089.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 211aa    MW: 23784.8 Da    PI: 9.2962
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013636089.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000144870123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C + F++   L  H+++H
  XP_013636089.1 48 YTCSFCRRDFRSAQALGGHMNVH 70
                    9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.16E-64574No hitNo description
PROSITE profilePS5015711.1364875IPR007087Zinc finger, C2H2
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MKRTHLASFS SKNKTQEEEG DTSGNDRVIM NLYNSYEAGL IPWPPKNYTC SFCRRDFRSA  60
QALGGHMNVH RRDRAKLRQI PSWLFEPHQH VPVGNPNPNF GSSSPSTTPA HLDPSLTNQI  120
SKTTPFSSDR FDLLDYTTSH GGSMKEREKN KSNVCSRELK KSAIDSCHAA KCEISRGEMN  180
DKKHGVARLE LGMDLRNPKQ VLDLELRLGC L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-124370229superman protein
2l1o_A2e-124370229Transcriptional regulator SUPERMAN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, axillary buds and flowers. {ECO:0000269|Ref.4}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may regulate cell division and growth. {ECO:0000269|Ref.4}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013636089.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1553370.0AC155337.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH117N09, complete sequence.
GenBankAC1892200.0AC189220.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010H06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013636087.11e-159PREDICTED: transcriptional regulator SUPERMAN-like
RefseqXP_013636088.11e-159PREDICTED: transcriptional regulator SUPERMAN-like
RefseqXP_013636089.11e-159PREDICTED: transcriptional regulator SUPERMAN-like
SwissprotQ9SLB81e-115ZFP11_ARATH; Zinc finger protein 11
TrEMBLA0A0D3C5T71e-157A0A0D3C5T7_BRAOL; Uncharacterized protein
STRINGBo4g191520.11e-158(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42410.11e-109zinc finger protein 11