PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013636083.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

VOZ

Protein Properties

Length: 389aa MW: 43806.6 Da PI: 7.8483

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013636083.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	414.3	2.2e-127	128	342	1	215
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaael 95 pppsaflgpkcalwdctrpa+gs+w+ dycs +h +lalne++pgt+pvlrp+gi+lkd+ll++al+ak+ gk+vgip+cega+++k+pw+aael XP_013636083.1 128 PPPSAFLGPKCALWDCTRPAHGSDWYLDYCSDYHGNLALNEDSPGTAPVLRPGGISLKDNLLIDALRAKTLGKNVGIPVCEGAVNTKCPWKAAEL 222 89******************************************************************************************* PP VOZ 96 fdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklv 190 f+l+l+egetirewlffdkprra++sgnrkqrslpdysgrgwhesrkq+mke++g+krsyymdpqp++ fewhl+ey+ine+d +alyrlelk++ XP_013636083.1 223 FHLELVEGETIREWLFFDKPRRAYDSGNRKQRSLPDYSGRGWHESRKQLMKEQEGQKRSYYMDPQPPGLFEWHLFEYQINESDVCALYRLELKVT 317 ******************************************************************************************* PP VOZ 191 dekksakgkvskdsladlqkklgrl 215 ++kks+kg+v+kd+ladlqkk+ ++ XP_013636083.1 318 NGKKSPKGRVAKDPLADLQKKMEKM 342 *******************9886 PP

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MSNHEKITCV STSHQNLVEK LMQLQERFSH LQAARKEGRV GDHAVLEAQI SQNLREWQAE 60 LTAPSPEPSL LVRKSWTLVD HSNLDITSQL DYHLSEVRQE FNNSPSVKLD ASENYTDFTT 120 PQSVRVPPPP SAFLGPKCAL WDCTRPAHGS DWYLDYCSDY HGNLALNEDS PGTAPVLRPG 180 GISLKDNLLI DALRAKTLGK NVGIPVCEGA VNTKCPWKAA ELFHLELVEG ETIREWLFFD 240 KPRRAYDSGN RKQRSLPDYS GRGWHESRKQ LMKEQEGQKR SYYMDPQPPG LFEWHLFEYQ 300 INESDVCALY RLELKVTNGK KSPKGRVAKD PLADLQKKME KMGQLTPEVA SDKPSPPTKG 360 RTKATKGVKL ATQDTPVPAT VAKEPLSHQ

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MSNHEKITCV STSHQNLVEK LMQLQERFSH LQAARKEGRV GDHAVLEAQI SQNLREWQAE  60
LTAPSPEPSL LVRKSWTLVD HSNLDITSQL DYHLSEVRQE FNNSPSVKLD ASENYTDFTT  120
PQSVRVPPPP SAFLGPKCAL WDCTRPAHGS DWYLDYCSDY HGNLALNEDS PGTAPVLRPG  180
GISLKDNLLI DALRAKTLGK NVGIPVCEGA VNTKCPWKAA ELFHLELVEG ETIREWLFFD  240
KPRRAYDSGN RKQRSLPDYS GRGWHESRKQ LMKEQEGQKR SYYMDPQPPG LFEWHLFEYQ  300
INESDVCALY RLELKVTNGK KSPKGRVAKD PLADLQKKME KMGQLTPEVA SDKPSPPTKG  360
RTKATKGVKL ATQDTPVPAT VAKEPLSHQ

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles and mesophyll cells of various tissues. Expressed in the root, especially in the root tip. Also detected in stamen filaments, stipules and anthers. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ1 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Binds as a dimer to the palindromic sequence 5'-GCGTNNNNNNNACGC-3'. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013636083.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. Down-regulated by far-red light (at protein level). {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013636082.1	0.0	PREDICTED: transcription factor VOZ2-like
Refseq	XP_013636083.1	0.0	PREDICTED: transcription factor VOZ2-like
Refseq	XP_013636084.1	0.0	PREDICTED: transcription factor VOZ2-like
Swissprot	Q9SLB9	1e-179	VOZ2_ARATH; Transcription factor VOZ2
TrEMBL	A0A0D3C5T6	0.0	A0A0D3C5T6_BRAOL; Uncharacterized protein
STRING	Bo4g191510.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42400.1	0.0	vascular plant one zinc finger protein 2

Publications ? help Back to Top
Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Koguchi M,Yamasaki K,Hirano T,Sato MH Vascular plant one-zinc-finger protein 2 is localized both to the nucleus and stress granules under heat stress in Arabidopsis. Plant Signal Behav, 2017. 12(3): p. e1295907 [PMID:28277968] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119]