PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013635979.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SBP
Protein Properties Length: 872aa    MW: 96873.2 Da    PI: 6.1232
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013635979.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP134.82.7e-42114191178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +Cqve+Ceadls++k+yhrrhkvCe+hska+++lv g++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  XP_013635979.1 114 VCQVESCEADLSKVKDYHRRHKVCEMHSKATSALVGGIMQRFCQQCSRFHVLEEFDEGKRSCRRRLAGHNKRRRKTNP 191
                     6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.5E-34107176IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.513112189IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.79E-39114193IPR004333Transcription factor, SBP-box
PfamPF031107.3E-31115188IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.203.8E-7657764IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.73E-7660764IPR020683Ankyrin repeat-containing domain
CDDcd002042.05E-8663761No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 872 aa     Download sequence    Send to blast
MDVGKRSVEW DLNDWKWDGD LFIATPLNPG VSQTMGRQFF PLGNSSNTSS SCSDEGNDNT  60
REVEKRRRAA ATGEDGGGGG LSLKLGENGY DLNGEREGKK TKLGGGSGTN HRSVCQVESC  120
EADLSKVKDY HRRHKVCEMH SKATSALVGG IMQRFCQQCS RFHVLEEFDE GKRSCRRRLA  180
GHNKRRRKTN PEPAANGNPL SDDNQSSNYL LICLLKILSN MHSANGSSGD QDLMPHLLKS  240
LVSHAGEQLG KNLVELLLQG GSGLLAAPQE DSKQAPELPR QELYASGNRS EKLQTKVNDF  300
DLNDIYIDSD DGGTDLERSS PPTTTTNPAT SSPDYPSWIH QTSRNSDSAS DQSPSSSSED  360
AQMRTGRIVF KLFGKEPNDF PPVLRGQILD WLSHTPTDIE SYIRPGCIVL TIYLRQAETA  420
WEELSDDMGF SLSKLLDLSD DPLWTSGWIY VRMQNQYAFV FDGQVVVDSS LPLRSHDYSH  480
IISVRPLAVA AATGKAQFTV KGINLRRPGT RLLCAVEGKY LIQENDDLKE SNECVSFSCD  540
LPITSGRGFM EIEDQGGLSS SFFPFIVVEE DDVCSEIRIL ETTLEFTDTD SAKLAMEFIH  600
ELGWLLRRSK LGVFSLARFK WLIEFSMDRE WCAVIRKLLN MLFEGAVGDT SSDAAALSEL  660
CLLHRAVRKN SKPMVEMLLR YVVPNQQRIH SLFRPDSAGP AGLTPLHIAA GKDGSEDVLD  720
ALTEDPSMVG IEAWRTSRDT TGFTPEDYAR LRGHFSYIHL IQRKINKKSA TEDHVVVNIP  780
ASSISDREQK ETKSGSSALE ITHGNHKLQC KLCDHKLVYG TARRSVAYRP AMLSMVAIAA  840
VCVCVALLFK SCPEVLYVFQ PFRWELLDYG TR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-32105188184squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed constitutively during plant development. {ECO:0000269|PubMed:10524240}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00603PBMTransfer from AT2G47070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013635979.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635979.10.0PREDICTED: squamosa promoter-binding-like protein 1 isoform X3
SwissprotQ9SMX90.0SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBLA0A0D3BNN10.0A0A0D3BNN1_BRAOL; Uncharacterized protein
STRINGBo4g005730.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]