PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013635978.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SBP
Protein Properties Length: 888aa    MW: 98798.3 Da    PI: 6.1036
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013635978.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP134.82.8e-42131208178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +Cqve+Ceadls++k+yhrrhkvCe+hska+++lv g++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  XP_013635978.1 131 VCQVESCEADLSKVKDYHRRHKVCEMHSKATSALVGGIMQRFCQQCSRFHVLEEFDEGKRSCRRRLAGHNKRRRKTNP 208
                     6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.7E-34124193IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.513129206IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.92E-39131210IPR004333Transcription factor, SBP-box
PfamPF031107.4E-31132205IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.203.9E-7673780IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.73E-7676780IPR020683Ankyrin repeat-containing domain
CDDcd002041.99E-8679777No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 888 aa     Download sequence    Send to blast
MEARIEGEGQ HFYGYRAMDV GKRSVEWDLN DWKWDGDLFI ATPLNPGVSQ TMGRQFFPLG  60
NSSNTSSSCS DEGNDNTREV EKRRRAAATG EDGGGGGLSL KLGENGYDLN GEREGKKTKL  120
GGGSGTNHRS VCQVESCEAD LSKVKDYHRR HKVCEMHSKA TSALVGGIMQ RFCQQCSRFH  180
VLEEFDEGKR SCRRRLAGHN KRRRKTNPEP AANGNPLSDD NQSSNYLLIC LLKILSNMHS  240
NGSSGDQDLM PHLLKSLVSH AGEQLGKNLV ELLLQGGSGL LAAPQEDSKQ APELPRQELY  300
ASGNRSEKLQ TKVNDFDLND IYIDSDDGGT DLERSSPPTT TTNPATSSPD YPSWIHQTSR  360
NSDSASDQSP SSSSEDAQMR TGRIVFKLFG KEPNDFPPVL RGQILDWLSH TPTDIESYIR  420
PGCIVLTIYL RQAETAWEEL SDDMGFSLSK LLDLSDDPLW TSGWIYVRMQ NQYAFVFDGQ  480
VVVDSSLPLR SHDYSHIISV RPLAVAAATG KAQFTVKGIN LRRPGTRLLC AVEGKYLIQE  540
NDDLKESNEC VSFSCDLPIT SGRGFMEIED QGGLSSSFFP FIVVEEDDVC SEIRILETTL  600
EFTDTDSAKL AMEFIHELGW LLRRSKLGVF SLARFKWLIE FSMDREWCAV IRKLLNMLFE  660
GAVGDTSSDA AALSELCLLH RAVRKNSKPM VEMLLRYVVP NQQRIHSLFR PDSAGPAGLT  720
PLHIAAGKDG SEDVLDALTE DPSMVGIEAW RTSRDTTGFT PEDYARLRGH FSYIHLIQRK  780
INKKSATEDH VVVNIPASSI SDREQKETKS GSSALEITHG NHKLQCKLCD HKLVYGTARR  840
SVAYRPAMLS MVAIAAVCVC VALLFKSCPE VLYVFQPFRW ELLDYGTR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-32122205184squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed constitutively during plant development. {ECO:0000269|PubMed:10524240}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00603PBMTransfer from AT2G47070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013635978.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635978.10.0PREDICTED: squamosa promoter-binding-like protein 1 isoform X2
SwissprotQ9SMX90.0SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBLA0A0D3BNN10.0A0A0D3BNN1_BRAOL; Uncharacterized protein
STRINGBo4g005730.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]