PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013635792.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 302aa    MW: 32881.2 Da    PI: 8.2422
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013635792.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.94.8e-10236281655
                     HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri  ++ +L+el+P+ +        s ae+L +A e+Ik Lq
  XP_013635792.1 236 SIAERDRRTRISGKLKKLQELVPNiD-----NQTSYAEMLDLAAEHIKGLQ 281
                     689*********************55.....789****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.491230280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-14233292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.87E-10234285No hitNo description
Gene3DG3DSA:4.10.280.105.2E-12235290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-7236281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-11236286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MYPRSSSKST TPDGGDAENN PYDETSGGFS SLGSQTHHNV SPPPRQQHNP NVVGFGHHFS  60
GEPSTIGHSG ASSSPLFRHR SSPAGFYDQL LPTEPNGFSL GQPNGGYGGG RGEERGPSRL  120
KSEQRFSGRS SSNYQEHNSL PRISEVQAAA AAINSAASTS MSFGNDGNNW DRSSSQISFT  180
IDERSKTTDF FTLETQFSMP QTSLEMARME SLMKIPEGSV PCRVRAKRGC ATHPRSIAER  240
DRRTRISGKL KKLQELVPNI DNQTSYAEML DLAAEHIKGL QHQVESLERG MEGCTCGACK  300
KR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013635792.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635792.10.0PREDICTED: transcription factor bHLH129-like isoform X2
RefseqXP_013690850.10.0transcription factor bHLH129-like isoform X2
SwissprotQ9ZW811e-114BH129_ARATH; Transcription factor bHLH129
TrEMBLA0A0D3C5Z50.0A0A0D3C5Z5_BRAOL; Uncharacterized protein
STRINGBo4g194080.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43140.21e-125bHLH family protein