PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013635791.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 305aa    MW: 33168.4 Da    PI: 7.9622
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013635791.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.94.9e-10239284655
                     HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri  ++ +L+el+P+ +        s ae+L +A e+Ik Lq
  XP_013635791.1 239 SIAERDRRTRISGKLKKLQELVPNiD-----NQTSYAEMLDLAAEHIKGLQ 284
                     689*********************55.....789****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.491233283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-14236295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.33E-10237288No hitNo description
Gene3DG3DSA:4.10.280.105.3E-12238293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-7239284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-11239289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MYPRSSSKST TPDGGDAENN PYDETSGGFS SLGSQTHHNV SPPPRQQHNP NVVGFGHHFS  60
GEPSTIGHSG ASSSPLFRHR SSPAGFYDQL LPTEPNEGTG FSLGQPNGGY GGGRGEERGP  120
SRLKSEQRFS GRSSSNYQEH NSLPRISEVQ AAAAAINSAA STSMSFGNDG NNWDRSSSQI  180
SFTIDERSKT TDFFTLETQF SMPQTSLEMA RMESLMKIPE GSVPCRVRAK RGCATHPRSI  240
AERDRRTRIS GKLKKLQELV PNIDNQTSYA EMLDLAAEHI KGLQHQVESL ERGMEGCTCG  300
ACKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013635791.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635790.10.0PREDICTED: transcription factor bHLH129-like isoform X1
RefseqXP_013635791.10.0PREDICTED: transcription factor bHLH129-like isoform X1
SwissprotQ9ZW811e-115BH129_ARATH; Transcription factor bHLH129
TrEMBLA0A3P6D6J30.0A0A3P6D6J3_BRAOL; Uncharacterized protein
STRINGBo4g194080.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43140.21e-123bHLH family protein