PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013635728.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 209aa MW: 23383.8 Da PI: 6.624 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.8 | 0.00035 | 157 | 179 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+ +Fs+ L H +H XP_013635728.1 157 YQCKTCDWTFSSFQALGGHRASH 179 9***********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.46E-5 | 155 | 184 | No hit | No description |
Pfam | PF13912 | 1.1E-9 | 156 | 181 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.993 | 157 | 184 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 159 | 179 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MEAFEELIAT SKEQSLILKG KRTKRQRPQS PVHFSISPPI VSCPARDVIE EYIYLDSKEN 60 ALGNNVENHK KDGVITSSSS SASWSSNNNP TTLKAEEDEE DLDIASCLIL LSQGHSLPQL 120 KIPNHETNNN NTYKFSSRRF LETSSSNGGG KADSYVYQCK TCDWTFSSFQ ALGGHRASHK 180 KHKATSFYSN LDQVFVYDDI YSSITNIYA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013635728.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC236784 | 0.0 | AC236784.1 Brassica napus clone JBnB009P12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013635728.1 | 1e-156 | PREDICTED: zinc finger protein ZAT5-like, partial | ||||
TrEMBL | A0A0D3E796 | 1e-127 | A0A0D3E796_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g069630.1 | 1e-128 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2231 | 27 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04390.1 | 1e-88 | C2H2 family protein |