PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013635683.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 238aa MW: 27162.8 Da PI: 8.4562 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 62.6 | 4.3e-20 | 16 | 62 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 e + n qvtfskRr+g++KKA+EL++LC++ vi+fs+ +k++ + XP_013635683.1 16 MEKDANLQVTFSKRRQGLFKKASELCTLCNVGMGVIVFSPGQKVFSF 62 688999*************************************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.5E-28 | 6 | 65 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 22.343 | 6 | 66 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.71E-31 | 7 | 80 | No hit | No description |
SuperFamily | SSF55455 | 2.22E-25 | 7 | 87 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-16 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.7E-22 | 15 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-16 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-16 | 43 | 64 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MPRSTGGRKK IPIEKMEKDA NLQVTFSKRR QGLFKKASEL CTLCNVGMGV IVFSPGQKVF 60 SFGNPDVKSV IDNFKNHNHS PLLYTQDGLN PTIQNLNSLL TQELTILEME KKRKKELDEI 120 KNKREEIEKW WEKSPNQLDL SQNTCLTRAL ENLKMELVSQ RSQQLQAIDP PNYYGESYNN 180 IVGGGNVDLF DQTSMFDGNA SNYNPNMIIS NHGPMVENNH KTNVFEAFRP RSNLNLPE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 110 | 114 | KKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013635683.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013635683.1 | 1e-177 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A3P6C454 | 1e-171 | A0A3P6C454_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g070340.1 | 1e-165 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16574 | 6 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 7e-60 | AGAMOUS-like 62 |