PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013635599.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 274aa MW: 31456.7 Da PI: 4.5374

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013635599.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.5	4.8e-08	166	210	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ r RR+ri ++ +eL +l+P +Kl+ ae+ + A +Y+k Lq XP_013635599.1 166 SIAARERRRRIADKTQELTKLIPGG-----QKLNTAEMFQAAAKYVKFLQ 210 577899***************86.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.01E-10	158	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.309	160	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-10	163	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.4E-8	166	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-5	166	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.91E-4	181	213	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MSSMDCLSHF FNWDQPIQLQ DCFIPDMDMI IPETASFFFQ SQPQLQFDQP LFQEEAPSQR 60 LLELTHFDAF CDQFLPSQEI FLPYPKAETF DESHNMDSLL PTSKRQKLFN SSYHWNTHNH 120 FPSPNIDFVP EAFIFPEFTV PDFPLVFEAG RGDQESTKKP TLSSQSIAAR ERRRRIADKT 180 QELTKLIPGG QKLNTAEMFQ AAAKYVKFLQ SQVGILQMMQ TAKKTQGISD AEIETQVLLG 240 SQAIQEKLST EEVCLVPCQM VRELTSEESI LEKP

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013635599.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013635599.1	0.0	PREDICTED: transcription factor bHLH53-like
Swissprot	Q84RD0	1e-129	BH053_ARATH; Transcription factor bHLH53
TrEMBL	A0A0D3C475	0.0	A0A0D3C475_BRAOL; Uncharacterized protein
STRING	Bo4g182930.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4547	25	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34820.1	1e-116	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]