PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013635570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 240aa MW: 27909.1 Da PI: 9.967 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 60.8 | 1.6e-19 | 17 | 62 | 4 | 49 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 e +s qvt+skRr+g++KKA+EL++LC++e+ +++fs+ k++ + XP_013635570.1 17 EKDSDLQVTYSKRRQGLFKKASELCTLCGVEIGILVFSPGRKVFSF 62 667788*********************************9999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 22.876 | 6 | 66 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.7E-29 | 6 | 65 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.23E-24 | 7 | 81 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-16 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.8E-22 | 15 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-16 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-16 | 43 | 64 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MARSRKGRRK IQIVKMEKDS DLQVTYSKRR QGLFKKASEL CTLCGVEIGI LVFSPGRKVF 60 SFGNPDVRYV FNRFKIYHQN PFQLTEFGPS ATIRDLNSIL SQELVKLEKE KARRKILEKI 120 RIQREETDKW WEKPPSELNL RQNACLVSVL ENLRMNLGSP RFQQAMVPQN YCGGSNNNIV 180 GGGNTDPLDE RSMFDVNAFN YNPNMMIPNQ GPMLGYNNIK FEVFDPIYNM NWPEYKHGPY |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during the syncytial endosperm development. {ECO:0000269|PubMed:18334668}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the endosperm but not in the embryo. Detected in young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:18334668}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013635570.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013635570.1 | 1e-179 | PREDICTED: agamous-like MADS-box protein AGL62 isoform X1 | ||||
Swissprot | Q9FKK2 | 2e-61 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A0D3C2M4 | 1e-178 | A0A0D3C2M4_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g165540.1 | 1e-179 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16574 | 6 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36590.1 | 4e-60 | M-type_MADS family protein |
Publications ? help Back to Top | |||
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