PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013635537.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 167aa MW: 19234.8 Da PI: 5.2957 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.8 | 0.00035 | 71 | 94 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt..H 23 C++C+ ++++ +++ +H+++ H XP_013635537.1 71 ICEICDVVYKTCDDFITHLKSeqH 94 7******************98666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 5.8 | 70 | 94 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12874 | 0.021 | 72 | 94 | No hit | No description |
SMART | SM00355 | 9.7 | 111 | 135 | IPR015880 | Zinc finger, C2H2-like |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MLISGDSTMV NRCRLQKFSK FSKFCAYPED VGPVTTLDNQ GEKVFVKEFV WESLLTANAS 60 PCAAMDEPLC ICEICDVVYK TCDDFITHLK SEQHRESLFG IVPLDYGKPR YFCPVCNYPA 120 YDEFNMSLHN ESKDHNHKLA DKEQDCESRK RNPQVDLFNE ISKKQSL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013635537.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013635537.1 | 1e-124 | PREDICTED: uncharacterized protein LOC106341281 | ||||
TrEMBL | A0A0D3C6Q2 | 4e-55 | A0A0D3C6Q2_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g198630.1 | 6e-56 | (Brassica oleracea) |