PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013635515.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 368aa    MW: 40464.6 Da    PI: 9.8336
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013635515.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_120.78.8e-07327349527
                     CHHHCHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkae 27 
                     k  rrk+kNRe+A rsR+RK + 
  XP_013635515.1 327 KTHRRKIKNRESAARSRARKMQT 349
                     678*****************886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474541.44E-5298350IPR008917Transcription factor, Skn-1-like, DNA-binding domain
Gene3DG3DSA:1.10.880.101.7E-5298350IPR008917Transcription factor, Skn-1-like, DNA-binding domain
PROSITE patternPS000360330345IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MDNNWNFKTM GTGPRGAMSR LPVSAPLSQQ GSLYSRTLDQ IQNNLGKDYG SMNMEELLMS  60
IYSAEGTQGV VPTNGVNEGL QRQGSITLPR ILSQKTVDEV WKYITEEEQH PSNDGGRTNI  120
PQIQKQPTLG DITLEQFLTR AVAIHHPSSI SGIPNTSLSV EFQQKPVVSD VLGNINTVPS  180
NIIHGPYLNT NVNGSTSGQE QKQHNPFQPQ QPIMSKPHGY GYGTHVAFTS DQVNAHGIRD  240
SYMETGDKSN HENNVTLVQS VAPAPGGAMG VEVCSQITPF PVLDGIPKIN AGSSIVSPFT  300
FTTTVSNSVR DRNRNNGIAA EKKLVEKTHR RKIKNRESAA RSRARKMQTL SFCFYSFKLW  360
SLKLKLKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1339347ARSRARKMQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013635515.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894130.0AC189413.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB061E18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635515.10.0PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 8 isoform X3
TrEMBLA0A0D3BUS10.0A0A0D3BUS1_BRAOL; Uncharacterized protein
TrEMBLA0A3P6C2140.0A0A3P6C214_BRAOL; Uncharacterized protein
STRINGBo4g078610.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42910.11e-79bZIP family protein