PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013635469.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 312aa    MW: 34663.5 Da    PI: 9.6502
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013635469.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix67.62.4e-2143134187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 
                     +W+ +e+ aLi+++r+++++l+rg+lk+++Weev++++  +  g+  +++++qC++k+e+l++ry+++ +++++   ++ +s++++++++ea
  XP_013635469.1  43 CWSLEETTALIDGYRDKWHALGRGNLKANHWEEVAEAVaaACPGVapRKTAVQCRHKMEKLRQRYRAEIQRARSVpVARFVSSWVHYKRMEA 134
                     7************************************977344444488*************************977999**********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.0E-1942135No hitNo description
PROSITE profilePS500906.3344104IPR017877Myb-like domain
SMARTSM005954.4E-1051140IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MSDPDSPPTH DPIPDRDQPE PASATDPKIP SVPKSSRRLP PPCWSLEETT ALIDGYRDKW  60
HALGRGNLKA NHWEEVAEAV AAACPGVAPR KTAVQCRHKM EKLRQRYRAE IQRARSVPVA  120
RFVSSWVHYK RMEAMEITKP DGEENQFSGG GPTPRFFNRN GGGGGGGIRI RIPTGVSVAQ  180
PGPRIEPKSF AVSTNPRPGR VVGTGSSYGA RVVGGDDDNR GGKRGCEMMM MCDDSIASAI  240
KLLGDAMLRT EEKKMEMTRE IEGMRMEMEM KRTKMVLESQ QRIVEAFART MSENLEEEEK  300
KMKKARRVSS VE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013635469.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3155985e-85AJ315598.1 Brassica napus microsatellite, clone Na10-F06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635469.10.0PREDICTED: trihelix transcription factor ASIL2
TrEMBLA0A0D3BPX10.0A0A0D3BPX1_BRAOL; Uncharacterized protein
TrEMBLA0A3P6C1Z70.0A0A3P6C1Z7_BRAOL; Uncharacterized protein
STRINGBo4g023990.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM89632534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.13e-78Trihelix family protein