PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013635452.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | LBD | ||||||||
Protein Properties | Length: 217aa MW: 24090.7 Da PI: 6.8224 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 121.4 | 4.8e-38 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkCa++Cv+apyf+++q + +fa++hk+FGasn +k+l++lp ++r +a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l+a+l XP_013635452.1 7 PCGACKFLRRKCANGCVFAPYFCHDQgAPHFAAIHKVFGASNASKILSNLPISDRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQL 101 7*************************889****************************************************************** PP DUF260 95 allkee 100 + lk++ XP_013635452.1 102 EILKQQ 107 **9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.913 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.3E-36 | 7 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MSSSGSPCGA CKFLRRKCAN GCVFAPYFCH DQGAPHFAAI HKVFGASNAS KILSNLPISD 60 RCEAAITISY EAQARLQDPI YGCVSHIFAL QQQVVNLQAQ LEILKQQAAQ SIMFADSPSS 120 VNPNSYYGDN TKTSYHHDHH HEHRNIHHHD ETRLVYQTGS SWMVQHGDAT VNSYPTGNCS 180 GFGEVSIYPD LEQHLNSFNQ DHLKELQSAN FGYISFS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-33 | 4 | 102 | 8 | 105 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-33 | 4 | 102 | 8 | 105 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:12068116}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19. {ECO:0000269|PubMed:17259263}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013635452.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013635452.1 | 1e-163 | PREDICTED: LOB domain-containing protein 29 | ||||
Swissprot | Q9M2J7 | 1e-127 | LBD29_ARATH; LOB domain-containing protein 29 | ||||
TrEMBL | A0A0D3BX42 | 1e-161 | A0A0D3BX42_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g108600.1 | 1e-162 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 1e-112 | lateral organ boundaries-domain 29 |
Publications ? help Back to Top | |||
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