PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013635438.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 270aa    MW: 30367.8 Da    PI: 5.4581
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013635438.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_125.72.6e-08129175854
                     HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   8 rrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                     + + +NRe+A rs ++K     eLe+kv++Le++ + L  el+  k 
  XP_013635438.1 129 KIALSNRESAARSKEKKALHESELEDKVETLETQIDILTAELKLEKR 175
                     55789**********************************99987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.8E-7118176No hitNo description
SMARTSM003384.3E-8122186IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.65E-8126177No hitNo description
PfamPF077165.6E-7133175IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MDGHADIPPS YSGLSQYPRA NPFGDESSNR ATMPPPSGSS LPPFPLRLRI PPTGQPFQFG  60
SQNFIPGSSP SQSMLSQVPH TMLDSSSIGS GSSQPSSVFS GLFNADQLSK IAASNELKEM  120
AESDPKHLKI ALSNRESAAR SKEKKALHES ELEDKVETLE TQIDILTAEL KLEKRERMTA  180
DDECVQFRIR LHAGEAHARL REGLIEQLNG EVRRLTEEAS GQREEMSRLR EEVSEYRRRE  240
SERMNANMLE QLNINQHFQE KPQQTKYNFE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013635438.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635438.10.0PREDICTED: transcription factor VIP1-like
RefseqXP_013635439.10.0PREDICTED: transcription factor VIP1-like
TrEMBLA0A078JX800.0A0A078JX80_BRANA; BnaAnng36910D protein
STRINGBra030310.1-P2e-95(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2350234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.39e-27bZIP family protein